Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMV66_RS15945 Genome accession   NZ_LR890184
Coordinates   3304351..3304974 (-) Length   207 a.a.
NCBI ID   WP_045375660.1    Uniprot ID   -
Organism   Klebsiella aerogenes isolate MINF_10B-sc-2280448     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3299351..3309974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMV66_RS15930 helD 3299586..3301640 (-) 2055 WP_045375578.1 DNA helicase IV -
  JMV66_RS15935 - 3301764..3302210 (+) 447 WP_045375580.1 YccF domain-containing protein -
  JMV66_RS15940 yccS 3302228..3304363 (+) 2136 WP_045375582.1 YccS family putative transporter -
  JMV66_RS15945 sxy/tfoX 3304351..3304974 (-) 624 WP_045375660.1 TfoX/Sxy family DNA transformation protein Regulator
  JMV66_RS15950 sulA 3305424..3305933 (+) 510 WP_045375584.1 SOS-induced cell division inhibitor SulA -
  JMV66_RS15955 ompA 3306286..3307338 (+) 1053 WP_080470489.1 porin OmpA -
  JMV66_RS15960 matP 3307431..3307883 (-) 453 WP_045375588.1 macrodomain Ter protein MatP -
  JMV66_RS15965 - 3308068..3309825 (+) 1758 WP_045375590.1 Lon protease family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23614.36 Da        Isoelectric Point: 9.8892

>NTDB_id=1133257 JMV66_RS15945 WP_045375660.1 3304351..3304974(-) (sxy/tfoX) [Klebsiella aerogenes isolate MINF_10B-sc-2280448]
MKKISKLRFLQFQECLSPLGKICSRPLFGGYSLAIENTVFAMVAEGEIYLRVCEQSASYRVEHHSPMLMMRKNGRPVALK
YYRIDEALWQDSKMLFHLSQLSLHSARSDKQHQRDSGRLKNLPNISFHMELMLIHAGITDVKMLRTLGAEKSWLKLREHN
KGISINVLESLAGAIAGIHSAALPAQRRQELREWANTQGYSVEDYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=1133257 JMV66_RS15945 WP_045375660.1 3304351..3304974(-) (sxy/tfoX) [Klebsiella aerogenes isolate MINF_10B-sc-2280448]
ATGAAGAAAATTTCTAAATTACGGTTCCTCCAGTTTCAGGAGTGTCTTTCCCCATTAGGCAAAATCTGTAGTCGGCCATT
ATTCGGTGGTTATAGTCTGGCGATTGAAAATACCGTATTCGCCATGGTGGCTGAAGGCGAAATCTATCTTAGGGTTTGCG
AACAAAGTGCCTCTTATCGGGTTGAACATCACAGCCCGATGCTAATGATGCGCAAGAATGGCCGACCGGTGGCCTTAAAG
TATTACCGGATAGATGAAGCACTTTGGCAGGACAGTAAAATGCTGTTTCATCTGTCGCAGCTGTCATTGCATTCGGCGCG
AAGCGATAAGCAGCATCAGCGTGATTCCGGCAGGCTAAAGAATTTGCCTAATATCAGCTTCCATATGGAGTTGATGTTGA
TCCATGCCGGAATAACCGATGTGAAAATGCTGCGTACACTCGGGGCGGAAAAGAGCTGGTTAAAATTGAGAGAGCATAAT
AAAGGAATATCAATCAATGTCCTTGAGTCCCTGGCGGGCGCGATTGCCGGCATTCATTCCGCCGCGCTCCCGGCGCAGCG
GCGCCAGGAGCTACGGGAGTGGGCTAATACGCAAGGATACAGCGTGGAGGATTATTCCGGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

95.169

0.488

Multiple sequence alignment