Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMV71_RS15365 Genome accession   NZ_LR890181
Coordinates   3126230..3126844 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain MSB1_1H isolate MSB1_1H     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3121230..3131844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMV71_RS15350 helD 3121454..3123508 (-) 2055 WP_102191186.1 DNA helicase IV -
  JMV71_RS15355 - 3123634..3124080 (+) 447 WP_003035892.1 YccF domain-containing protein -
  JMV71_RS15360 yccS 3124099..3126252 (+) 2154 WP_032939270.1 YccS family putative transporter -
  JMV71_RS15365 sxy/tfoX 3126230..3126844 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  JMV71_RS15370 sulA 3127061..3127570 (+) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  JMV71_RS15375 ompA 3127928..3128974 (+) 1047 WP_003035883.1 porin OmpA -
  JMV71_RS15380 matP 3129064..3129516 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  JMV71_RS15385 - 3129702..3131462 (+) 1761 WP_003035878.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=1133235 JMV71_RS15365 WP_003035889.1 3126230..3126844(-) (sxy/tfoX) [Citrobacter freundii strain MSB1_1H isolate MSB1_1H]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1133235 JMV71_RS15365 WP_003035889.1 3126230..3126844(-) (sxy/tfoX) [Citrobacter freundii strain MSB1_1H isolate MSB1_1H]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGAGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGCATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment