Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMV86_RS16660 Genome accession   NZ_LR890178
Coordinates   3357482..3358078 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain INF007 isolate INF007     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3352482..3363078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMV86_RS16645 helD 3352690..3354744 (-) 2055 WP_151548172.1 DNA helicase IV -
  JMV86_RS16650 - 3354869..3355315 (+) 447 WP_002898425.1 YccF domain-containing protein -
  JMV86_RS16655 yccS 3355333..3357468 (+) 2136 WP_151548173.1 YccS family putative transporter -
  JMV86_RS16660 sxy/tfoX 3357482..3358078 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  JMV86_RS16665 - 3358169..3358384 (+) 216 WP_032441871.1 hypothetical protein -
  JMV86_RS16670 sulA 3358427..3358936 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  JMV86_RS16675 ompA 3359289..3360359 (+) 1071 WP_002898408.1 porin OmpA -
  JMV86_RS16680 matP 3360491..3360943 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  JMV86_RS16685 - 3361129..3362886 (+) 1758 WP_016529118.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=1133211 JMV86_RS16660 WP_004150836.1 3357482..3358078(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF007 isolate INF007]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1133211 JMV86_RS16660 WP_004150836.1 3357482..3358078(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF007 isolate INF007]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment