Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | M949_RS07215 | Genome accession | NZ_CP006649 |
| Coordinates | 1554568..1555221 (+) | Length | 217 a.a. |
| NCBI ID | WP_038693798.1 | Uniprot ID | - |
| Organism | Riemerella anatipestifer CH3 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1549568..1560221
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M949_RS07185 (M949_1514) | - | 1549931..1550308 (+) | 378 | WP_014938004.1 | group III truncated hemoglobin | - |
| M949_RS07190 (M949_1515) | dprA | 1550311..1551414 (+) | 1104 | WP_014938005.1 | DNA-processing protein DprA | Machinery gene |
| M949_RS07195 (M949_1516) | gdhA | 1551598..1552956 (+) | 1359 | WP_014938006.1 | NADP-specific glutamate dehydrogenase | - |
| M949_RS07200 (M949_1517) | - | 1553088..1553738 (+) | 651 | WP_014938007.1 | HD domain-containing protein | - |
| M949_RS07205 (M949_1518) | - | 1553790..1554341 (+) | 552 | WP_014938008.1 | hypothetical protein | - |
| M949_RS07215 (M949_1519) | comF | 1554568..1555221 (+) | 654 | WP_038693798.1 | ComF family protein | Machinery gene |
| M949_RS07220 (M949_1521) | - | 1555532..1556506 (+) | 975 | WP_004918076.1 | ribonucleotide-diphosphate reductase subunit beta | - |
| M949_RS07225 (M949_1522) | - | 1556557..1558212 (+) | 1656 | WP_014938011.1 | ribonucleoside-diphosphate reductase subunit alpha | - |
| M949_RS07230 (M949_1523) | - | 1558324..1559406 (+) | 1083 | WP_014938012.1 | serine hydrolase | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25329.43 Da Isoelectric Point: 9.4150
>NTDB_id=113319 M949_RS07215 WP_038693798.1 1554568..1555221(+) (comF) [Riemerella anatipestifer CH3]
MFLDFFLPNRCLKCNLIIPSEEIVCWACKSHINFTYNDFGGKGSFYQKVILKFPVNKAFSLMKYEKKELSQDIIHSLKYH
SIERVGKVLAHWVSENIDLSYQGIDILTSIPLHSKKQRERGYNQLHLFTKTLSQLQGIFYSHHLLKRNFYSKPQALKQKL
DREKIQNMFSVDEKVEGKHILLIDDVYTTGNTMSKAVWELLKGRDNQISILVLGLDD
MFLDFFLPNRCLKCNLIIPSEEIVCWACKSHINFTYNDFGGKGSFYQKVILKFPVNKAFSLMKYEKKELSQDIIHSLKYH
SIERVGKVLAHWVSENIDLSYQGIDILTSIPLHSKKQRERGYNQLHLFTKTLSQLQGIFYSHHLLKRNFYSKPQALKQKL
DREKIQNMFSVDEKVEGKHILLIDDVYTTGNTMSKAVWELLKGRDNQISILVLGLDD
Nucleotide
Download Length: 654 bp
>NTDB_id=113319 M949_RS07215 WP_038693798.1 1554568..1555221(+) (comF) [Riemerella anatipestifer CH3]
ATGTTTTTAGATTTTTTTCTACCAAATAGATGCCTAAAGTGTAATCTCATTATTCCTTCTGAGGAAATCGTGTGCTGGGC
TTGTAAATCTCATATCAATTTTACGTACAATGATTTTGGAGGGAAAGGGAGTTTTTATCAAAAAGTTATTCTTAAATTTC
CAGTAAATAAGGCTTTTAGTTTGATGAAATATGAGAAAAAAGAGCTGTCTCAAGATATTATACATTCCTTAAAATATCAT
TCTATAGAGCGAGTGGGTAAGGTGTTAGCCCATTGGGTTTCTGAAAATATAGATTTGTCTTATCAAGGGATAGATATATT
AACCAGCATACCGCTTCATTCTAAAAAGCAAAGAGAAAGAGGTTACAATCAGTTGCATTTGTTTACAAAGACGCTATCTC
AGCTACAGGGGATATTTTATTCTCACCATCTTCTTAAGAGAAACTTCTATTCTAAGCCTCAGGCTCTAAAACAAAAGTTG
GATAGGGAGAAAATACAAAATATGTTTTCTGTAGATGAGAAAGTAGAAGGTAAACATATCTTGCTTATAGATGATGTATA
TACCACAGGAAACACAATGAGTAAAGCAGTTTGGGAGCTACTAAAAGGAAGGGATAATCAGATAAGTATTTTGGTTTTAG
GTTTAGATGATTAG
ATGTTTTTAGATTTTTTTCTACCAAATAGATGCCTAAAGTGTAATCTCATTATTCCTTCTGAGGAAATCGTGTGCTGGGC
TTGTAAATCTCATATCAATTTTACGTACAATGATTTTGGAGGGAAAGGGAGTTTTTATCAAAAAGTTATTCTTAAATTTC
CAGTAAATAAGGCTTTTAGTTTGATGAAATATGAGAAAAAAGAGCTGTCTCAAGATATTATACATTCCTTAAAATATCAT
TCTATAGAGCGAGTGGGTAAGGTGTTAGCCCATTGGGTTTCTGAAAATATAGATTTGTCTTATCAAGGGATAGATATATT
AACCAGCATACCGCTTCATTCTAAAAAGCAAAGAGAAAGAGGTTACAATCAGTTGCATTTGTTTACAAAGACGCTATCTC
AGCTACAGGGGATATTTTATTCTCACCATCTTCTTAAGAGAAACTTCTATTCTAAGCCTCAGGCTCTAAAACAAAAGTTG
GATAGGGAGAAAATACAAAATATGTTTTCTGTAGATGAGAAAGTAGAAGGTAAACATATCTTGCTTATAGATGATGTATA
TACCACAGGAAACACAATGAGTAAAGCAGTTTGGGAGCTACTAAAAGGAAGGGATAATCAGATAAGTATTTTGGTTTTAG
GTTTAGATGATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
89.401 |
100 |
0.894 |