Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JL017_RS14730 Genome accession   NZ_LR883050
Coordinates   3010430..3011059 (-) Length   209 a.a.
NCBI ID   WP_047648225.1    Uniprot ID   -
Organism   Escherichia coli isolate L1_E925     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3005430..3016059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL017_RS14715 (ETECE925_03010) helD 3005672..3007726 (-) 2055 WP_001295354.1 DNA helicase IV -
  JL017_RS14720 (ETECE925_03011) yccF 3007849..3008295 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JL017_RS14725 (ETECE925_03012) yccS 3008305..3010467 (+) 2163 WP_000875061.1 YccS family putative transporter -
  JL017_RS14730 (ETECE925_03013) sxy/tfoX 3010430..3011059 (-) 630 WP_047648225.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JL017_RS14735 (ETECE925_03014) sulA 3011278..3011787 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JL017_RS14740 (ETECE925_03015) ompA 3012144..3013184 (+) 1041 WP_000750416.1 porin OmpA -
  JL017_RS14745 (ETECE925_03016) matP 3013260..3013712 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JL017_RS14750 (ETECE925_03017) ycbZ 3013898..3015658 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.10 Da        Isoelectric Point: 9.2180

>NTDB_id=1133142 JL017_RS14730 WP_047648225.1 3010430..3011059(-) (sxy/tfoX) [Escherichia coli isolate L1_E925]
MKSLSYKRIYKSQEYLATLGTIEYRLLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1133142 JL017_RS14730 WP_047648225.1 3010430..3011059(-) (sxy/tfoX) [Escherichia coli isolate L1_E925]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATTATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment