Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JL014_RS15145 Genome accession   NZ_LR883006
Coordinates   3069818..3070447 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate L5_E1779_ETEC     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3064818..3075447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL014_RS15130 (ETECE1779_03637) helD 3065060..3067114 (-) 2055 WP_000420536.1 DNA helicase IV -
  JL014_RS15135 (ETECE1779_03638) yccF 3067237..3067683 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JL014_RS15140 (ETECE1779_03639) yccS 3067693..3069855 (+) 2163 WP_000875015.1 YccS family putative transporter -
  JL014_RS15145 (ETECE1779_03640) sxy/tfoX 3069818..3070447 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JL014_RS15150 (ETECE1779_03641) sulA 3070666..3071175 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JL014_RS15155 (ETECE1779_03642) ompA 3071532..3072584 (+) 1053 WP_000750419.1 porin OmpA -
  JL014_RS15160 (ETECE1779_03643) matP 3072659..3073111 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  JL014_RS15165 (ETECE1779_03644) ycbZ 3073297..3075057 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1133098 JL014_RS15145 WP_000839153.1 3069818..3070447(-) (sxy/tfoX) [Escherichia coli isolate L5_E1779_ETEC]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1133098 JL014_RS15145 WP_000839153.1 3069818..3070447(-) (sxy/tfoX) [Escherichia coli isolate L5_E1779_ETEC]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment