Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PCN061_RS05030 Genome accession   NZ_CP006636
Coordinates   1013250..1013879 (+) Length   209 a.a.
NCBI ID   WP_000839152.1    Uniprot ID   -
Organism   Escherichia coli PCN061     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1008250..1018879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCN061_RS05005 (PCN061_0988) ycbZ 1008651..1010411 (-) 1761 WP_000156518.1 Lon protease family protein -
  PCN061_RS05010 (PCN061_0989) matP 1010597..1011049 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  PCN061_RS05015 (PCN061_0990) ompA 1011125..1012165 (-) 1041 WP_000750416.1 porin OmpA -
  PCN061_RS05025 (PCN061_0991) sulA 1012522..1013031 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  PCN061_RS05030 (PCN061_0992) sxy/tfoX 1013250..1013879 (+) 630 WP_000839152.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PCN061_RS05035 (PCN061_0993) yccS 1013842..1016004 (-) 2163 WP_023281787.1 YccS family putative transporter -
  PCN061_RS05040 (PCN061_0994) yccF 1016014..1016460 (-) 447 WP_047928620.1 YccF domain-containing protein -
  PCN061_RS05045 (PCN061_0995) helD 1016583..1018637 (+) 2055 WP_047928621.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24093.97 Da        Isoelectric Point: 8.8133

>NTDB_id=113277 PCN061_RS05030 WP_000839152.1 1013250..1013879(+) (sxy/tfoX) [Escherichia coli PCN061]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVACRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=113277 PCN061_RS05030 WP_000839152.1 1013250..1013879(+) (sxy/tfoX) [Escherichia coli PCN061]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCATG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment