Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IHP20_RS06445 Genome accession   NZ_LR882050
Coordinates   1293538..1294167 (-) Length   209 a.a.
NCBI ID   WP_000699018.1    Uniprot ID   A0A8S7S1H1
Organism   Escherichia coli isolate 2016-02-324     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1288538..1299167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHP20_RS06430 (QREC_QR324_01249) helD 1288780..1290834 (-) 2055 WP_001338439.1 DNA helicase IV -
  IHP20_RS06435 (QREC_QR324_01250) yccF 1290957..1291403 (+) 447 WP_001261235.1 YccF domain-containing protein -
  IHP20_RS06440 (QREC_QR324_01251) yccS 1291413..1293575 (+) 2163 WP_000875061.1 YccS family putative transporter -
  IHP20_RS06445 (QREC_QR324_01252) sxy/tfoX 1293538..1294167 (-) 630 WP_000699018.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  IHP20_RS06450 (QREC_QR324_01253) sulA 1294386..1294895 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  IHP20_RS06455 (QREC_QR324_01254) ompA 1295252..1296292 (+) 1041 WP_000750416.1 porin OmpA -
  IHP20_RS06460 (QREC_QR324_01255) matP 1296368..1296820 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  IHP20_RS06465 (QREC_QR324_01256) ycbZ 1297006..1298766 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.10 Da        Isoelectric Point: 9.2180

>NTDB_id=1132754 IHP20_RS06445 WP_000699018.1 1293538..1294167(-) (sxy/tfoX) [Escherichia coli isolate 2016-02-324]
MKILSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1132754 IHP20_RS06445 WP_000699018.1 1293538..1294167(-) (sxy/tfoX) [Escherichia coli isolate 2016-02-324]
ATGAAAATCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAT
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment