Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IHP11_RS14325 Genome accession   NZ_LR881940
Coordinates   2946753..2947382 (-) Length   209 a.a.
NCBI ID   WP_000839152.1    Uniprot ID   -
Organism   Escherichia coli isolate 2015-01-2097     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2941753..2952382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHP11_RS14310 (QREC_QREC_02842) helD 2941995..2944049 (-) 2055 WP_001295354.1 DNA helicase IV -
  IHP11_RS14315 (QREC_QREC_02843) yccF 2944172..2944618 (+) 447 WP_001261235.1 YccF domain-containing protein -
  IHP11_RS14320 (QREC_QREC_02844) yccS 2944628..2946790 (+) 2163 WP_023281787.1 YccS family putative transporter -
  IHP11_RS14325 (QREC_QREC_02845) sxy/tfoX 2946753..2947382 (-) 630 WP_000839152.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  IHP11_RS14330 (QREC_QREC_02846) sulA 2947601..2948110 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  IHP11_RS14335 (QREC_QREC_02847) ompA 2948467..2949507 (+) 1041 WP_000750416.1 porin OmpA -
  IHP11_RS14340 (QREC_QREC_02848) matP 2949583..2950035 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  IHP11_RS14345 (QREC_QREC_02849) ycbZ 2950221..2951981 (+) 1761 WP_191521633.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24093.97 Da        Isoelectric Point: 8.8133

>NTDB_id=1132715 IHP11_RS14325 WP_000839152.1 2946753..2947382(-) (sxy/tfoX) [Escherichia coli isolate 2015-01-2097]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVACRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1132715 IHP11_RS14325 WP_000839152.1 2946753..2947382(-) (sxy/tfoX) [Escherichia coli isolate 2015-01-2097]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTTAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCATG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment