Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IEU92_RS04860 Genome accession   NZ_LR881938
Coordinates   1020362..1020991 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli str. K-12 substr. MG1655 strain K-12     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1015362..1025991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEU92_RS04840 ycbZ 1015763..1017523 (-) 1761 WP_000156518.1 Lon protease family protein -
  IEU92_RS04845 matP 1017709..1018161 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  IEU92_RS04850 ompA 1018237..1019277 (-) 1041 WP_000750416.1 porin OmpA -
  IEU92_RS04855 sulA 1019634..1020143 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  IEU92_RS04860 sxy/tfoX 1020362..1020991 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  IEU92_RS04865 yccS 1020954..1023116 (-) 2163 WP_000875061.1 YccS family putative transporter -
  IEU92_RS04870 yccF 1023126..1023572 (-) 447 WP_001261235.1 YccF domain-containing protein -
  IEU92_RS04875 helD 1023695..1025749 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1132682 IEU92_RS04860 WP_000839153.1 1020362..1020991(+) (sxy/tfoX) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1132682 IEU92_RS04860 WP_000839153.1 1020362..1020991(+) (sxy/tfoX) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment