Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ENTER_RS19915 Genome accession   NZ_LR881936
Coordinates   4222023..4223456 (+) Length   477 a.a.
NCBI ID   WP_058609398.1    Uniprot ID   A0AAP8NTY1
Organism   Enterobacter cancerogenus strain UPC1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4217023..4228456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ENTER_RS19885 (ENTER_4046) - 4217590..4218567 (+) 978 WP_202561275.1 calcium/sodium antiporter -
  ENTER_RS19890 (ENTER_4047) kdsD 4218581..4219567 (+) 987 WP_006178784.1 arabinose-5-phosphate isomerase KdsD -
  ENTER_RS19895 (ENTER_4048) kdsC 4219582..4220148 (+) 567 WP_202561276.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  ENTER_RS19900 (ENTER_4049) lptC 4220145..4220720 (+) 576 WP_006178786.1 LPS export ABC transporter periplasmic protein LptC -
  ENTER_RS19905 (ENTER_4050) lptA 4220689..4221243 (+) 555 WP_006178787.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  ENTER_RS19910 (ENTER_4051) lptB 4221250..4221975 (+) 726 WP_006178788.1 LPS export ABC transporter ATP-binding protein -
  ENTER_RS19915 (ENTER_4052) rpoN/rpoN1 4222023..4223456 (+) 1434 WP_058609398.1 RNA polymerase factor sigma-54 Machinery gene
  ENTER_RS19920 (ENTER_4053) hpf 4223479..4223766 (+) 288 WP_006178790.1 ribosome hibernation promoting factor -
  ENTER_RS19925 (ENTER_4054) ptsN 4223849..4224340 (+) 492 WP_006178791.1 PTS IIA-like nitrogen regulatory protein PtsN -
  ENTER_RS19930 (ENTER_4055) rapZ 4224386..4225240 (+) 855 WP_006178792.1 RNase adapter RapZ -
  ENTER_RS19935 (ENTER_4056) npr 4225237..4225509 (+) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  ENTER_RS19940 (ENTER_4057) mtgA 4225549..4226274 (-) 726 WP_202561277.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  ENTER_RS19945 (ENTER_4058) elbB 4226271..4226924 (-) 654 WP_202561278.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54129.99 Da        Isoelectric Point: 4.3332

>NTDB_id=1132673 ENTER_RS19915 WP_058609398.1 4222023..4223456(+) (rpoN/rpoN1) [Enterobacter cancerogenus strain UPC1]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDTQQTQDAEMLDTVDALEQKEMPD
ELPLDASWDELYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDD
ILESIGDEDVELEEIEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFAKETPWIDEARLIISDHLDLLANHDFRSLMRVTR
LKEEVLKEAVNVIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNGRWVVELNSDSIPRLQINQQYASMCTSVRNDSDNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEFMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTLLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=1132673 ENTER_RS19915 WP_058609398.1 4222023..4223456(+) (rpoN/rpoN1) [Enterobacter cancerogenus strain UPC1]
ATGAAGCAAGGTTTGCAATTAAGGCTGAGCCAGCAACTGGCGATGACGCCGCAGCTCCAGCAGGCGATCCGTCTGCTGCA
GCTGTCCACGTTAGAACTTCAGCAGGAGCTCCAGCAGGCGCTGGACAGCAATCCGTTGCTGGAGCAAACCGATCTTCATG
ACGAGGTAGACACCCAGCAAACGCAAGACGCAGAAATGCTCGACACCGTTGATGCGCTCGAACAAAAAGAGATGCCGGAC
GAGCTTCCGCTGGATGCCAGCTGGGATGAACTCTACACCGCCGGTACCCCTTCCGGAACGCGTGCAGACTACCAGGACGA
CGAGCTGCCGGTCTACCAGGGCGAAACCACCCAGTCTCTGCAGGATTACCTGATGTGGCAGGTGGAGCTTACGCCATTCT
CCGATACCGATCGCGCCATTGCGACCTCCATTGTCGATGCCGTGGATGACACGGGCTATCTGACCGTCACGCTGGACGAC
ATTCTGGAAAGCATCGGCGACGAAGACGTTGAGCTGGAAGAAATTGAAGCCGTGTTAAAGCGCATCCAGCGCTTCGACCC
GGTCGGTGTGGCGGCGAAAGATCTGCGCGACTGCCTGCTGATCCAGCTTTCGCAGTTCGCCAAAGAGACGCCGTGGATCG
ACGAAGCCCGCTTAATCATCAGCGATCATCTGGATCTGCTTGCCAACCATGACTTCCGTTCGCTGATGCGCGTCACGCGT
CTGAAAGAAGAGGTGCTGAAAGAGGCGGTGAATGTCATTCAGTCCCTCGATCCGCGTCCCGGCCAGTCGATCCAGACCAG
CGAACCGGAATACGTGATCCCTGACGTGCTGGTGCGAAAGCATAACGGTCGCTGGGTGGTTGAACTGAATTCAGACAGCA
TCCCTCGTTTGCAAATTAACCAGCAGTACGCCTCCATGTGCACCAGCGTTCGCAACGACTCCGACAATCAATATATTCGT
AGCAACCTTCAGGAAGCGCGATGGTTGATCAAAAGTCTGGAGAGCCGAAATGATACGCTGCTGCGCGTAAGCCGCTGTAT
TGTCGAACAGCAGCAGGCGTTCTTCGAGCAGGGCGAAGAATTTATGAAGCCGATGGTGCTGGCGGATATCGCCCAGGCCG
TCGAGATGCATGAATCAACCATTTCCCGCGTGACCACGCAGAAGTATCTGCACAGCCCGCGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCATGTGAATACCGAAGGCGGCGGCGAAGCCTCGTCAACGGCAATCCGTGCACTGGTGAAGAAGTT
GATCGCCGCGGAAAACCCCGCGAAGCCACTGAGCGACAGTAAGTTGACCACCCTTCTCTCCGATCAGGGTATTATGGTGG
CACGTCGTACCGTTGCGAAGTACCGAGAGTCTTTATCCATTCCGCCGTCTAACCAGCGTAAACAGCTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.545

100

0.482

Multiple sequence alignment