Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ENTER_RS08080 Genome accession   NZ_LR881936
Coordinates   1732956..1733582 (+) Length   208 a.a.
NCBI ID   WP_006174546.1    Uniprot ID   -
Organism   Enterobacter cancerogenus strain UPC1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1727956..1738582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ENTER_RS08060 (ENTER_1643) - 1728358..1730118 (-) 1761 WP_006174539.1 AAA family ATPase -
  ENTER_RS08065 (ENTER_1644) matP 1730305..1730757 (+) 453 WP_006174540.1 macrodomain Ter protein MatP -
  ENTER_RS08070 (ENTER_1645) ompA 1730821..1731873 (-) 1053 WP_127463528.1 porin OmpA -
  ENTER_RS08075 (ENTER_1647) sulA 1732229..1732738 (-) 510 WP_042319464.1 SOS-induced cell division inhibitor SulA -
  ENTER_RS08080 (ENTER_1648) sxy/tfoX 1732956..1733582 (+) 627 WP_006174546.1 TfoX/Sxy family DNA transformation protein Regulator
  ENTER_RS08085 (ENTER_1649) yccS 1733539..1735701 (-) 2163 WP_101737939.1 YccS family putative transporter -
  ENTER_RS08090 (ENTER_1650) - 1735721..1736167 (-) 447 WP_006174548.1 YccF domain-containing protein -
  ENTER_RS08095 (ENTER_1651) helD 1736289..1738343 (+) 2055 WP_202561954.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24045.59 Da        Isoelectric Point: 9.1543

>NTDB_id=1132662 ENTER_RS08080 WP_006174546.1 1732956..1733582(+) (sxy/tfoX) [Enterobacter cancerogenus strain UPC1]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESATYCVKHPSSFLTLVKRGRPVLLN
YYRVDEGLWQDRQKLLQLSSYALDAARKERSLRYQRNRLKDLPNLTFQIEVLLYEAGITNEETLRELGAKTSWLKIRSKN
RALSIKVLFALEGAIEGMHEAALPANIRRELTEWFNTLPEVQESRSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=1132662 ENTER_RS08080 WP_006174546.1 1732956..1733582(+) (sxy/tfoX) [Enterobacter cancerogenus strain UPC1]
ATGAAAAAGATATCATATGAACGGATTTATAAATCGCAGGAATACCTCTCCCCTCTGGGTGAAATTCACCATCGGGCGCT
GTTCGGCGGTTACACCCTGGCGGTAGACGATGCGGTGTTTGCCATGGTGTCAGACGGTGAACTTTACCTGCGTGCCTGCG
AGGAGAGCGCGACCTATTGCGTTAAGCATCCTTCTTCCTTCTTAACGCTTGTTAAGCGAGGCCGCCCCGTCCTGCTGAAT
TACTATCGCGTGGATGAAGGGCTGTGGCAGGATCGGCAAAAACTGCTTCAGCTCTCCTCTTATGCCCTCGATGCGGCACG
AAAAGAGCGTAGCCTGCGCTATCAACGAAACCGTCTCAAGGATCTGCCTAACCTGACTTTCCAGATTGAAGTGTTGCTCT
ACGAAGCCGGCATTACGAATGAAGAGACGTTGCGGGAACTCGGCGCAAAGACCAGCTGGCTAAAAATCAGATCGAAAAAC
CGGGCGCTCAGTATCAAGGTGCTTTTTGCCCTTGAAGGGGCCATTGAGGGGATGCATGAGGCGGCACTCCCGGCGAACAT
TCGCCGGGAGCTTACGGAGTGGTTTAATACACTGCCTGAGGTGCAGGAGAGTCGTTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

61.576

97.596

0.601

Multiple sequence alignment