Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CITRO_RS16340 Genome accession   NZ_LR881934
Coordinates   3296137..3296751 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain PSV     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3291137..3301751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CITRO_RS16325 (CITRO_3221) helD 3291361..3293415 (-) 2055 WP_202580630.1 DNA helicase IV -
  CITRO_RS16330 (CITRO_3222) - 3293541..3293987 (+) 447 WP_003035892.1 YccF domain-containing protein -
  CITRO_RS16335 (CITRO_3223) yccS 3294006..3296159 (+) 2154 WP_032939270.1 YccS family putative transporter -
  CITRO_RS16340 (CITRO_3224) sxy/tfoX 3296137..3296751 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  CITRO_RS16345 (CITRO_3225) sulA 3296969..3297478 (+) 510 WP_032948945.1 SOS-induced cell division inhibitor SulA -
  CITRO_RS16350 (CITRO_3226) ompA 3297836..3298894 (+) 1059 WP_003836839.1 porin OmpA -
  CITRO_RS16355 (CITRO_3227) matP 3298984..3299436 (-) 453 WP_202580631.1 macrodomain Ter protein MatP -
  CITRO_RS16360 (CITRO_3228) - 3299622..3301382 (+) 1761 WP_003035878.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=1132649 CITRO_RS16340 WP_003035889.1 3296137..3296751(-) (sxy/tfoX) [Citrobacter freundii strain PSV]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1132649 CITRO_RS16340 WP_003035889.1 3296137..3296751(-) (sxy/tfoX) [Citrobacter freundii strain PSV]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment