Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMV05_RS14570 Genome accession   NZ_LR878365
Coordinates   2834251..2834880 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella flexneri 3a isolate 83     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2829251..2839880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMV05_RS14555 helD 2829493..2831547 (-) 2055 WP_000420536.1 DNA helicase IV -
  JMV05_RS14560 - 2831670..2832116 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JMV05_RS14565 yccS 2832126..2834288 (+) 2163 WP_000875052.1 YccS family putative transporter -
  JMV05_RS14570 sxy/tfoX 2834251..2834880 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JMV05_RS14575 sulA 2835099..2835608 (+) 510 WP_000288715.1 SOS-induced cell division inhibitor SulA -
  JMV05_RS14580 ompA 2835964..2837010 (+) 1047 WP_005047463.1 porin OmpA -
  JMV05_RS14585 matP 2837086..2837538 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JMV05_RS14590 - 2837723..2839483 (+) 1761 WP_000156487.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1132594 JMV05_RS14570 WP_000839153.1 2834251..2834880(-) (sxy/tfoX) [Shigella flexneri 3a isolate 83]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1132594 JMV05_RS14570 WP_000839153.1 2834251..2834880(-) (sxy/tfoX) [Shigella flexneri 3a isolate 83]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAGCTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment