Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PPECC33_RS05275 Genome accession   NZ_CP006632
Coordinates   1118215..1118844 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli PCN033     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1113215..1123844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPECC33_RS05250 (PPECC33_01050) ycbZ 1113604..1115364 (-) 1761 WP_000156477.1 Lon protease family protein -
  PPECC33_RS05255 (PPECC33_01051) matP 1115550..1116002 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  PPECC33_RS05260 (PPECC33_01052) ompA 1116078..1117130 (-) 1053 WP_000750418.1 porin OmpA -
  PPECC33_RS05270 (PPECC33_01054) sulA 1117487..1117996 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  PPECC33_RS05275 (PPECC33_01055) sxy/tfoX 1118215..1118844 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PPECC33_RS05280 (PPECC33_01056) yccS 1118807..1120969 (-) 2163 WP_000875041.1 YccS family putative transporter -
  PPECC33_RS05285 (PPECC33_01057) yccF 1120979..1121425 (-) 447 WP_001261235.1 YccF domain-containing protein -
  PPECC33_RS05290 (PPECC33_01058) helD 1121548..1123602 (+) 2055 WP_000420538.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=113254 PPECC33_RS05275 WP_000839153.1 1118215..1118844(+) (sxy/tfoX) [Escherichia coli PCN033]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=113254 PPECC33_RS05275 WP_000839153.1 1118215..1118844(+) (sxy/tfoX) [Escherichia coli PCN033]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment