Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   CFBP498_RS06190 Genome accession   NZ_LR828253
Coordinates   1481400..1481801 (+) Length   133 a.a.
NCBI ID   WP_023904776.1    Uniprot ID   A0AAU0BDV7
Organism   Xanthomonas hortorum pv. gardneri strain CFBP 8129     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1476400..1486801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP498_RS06170 (CFBP8129_12450) tsaB 1476735..1477457 (+) 723 WP_006452753.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  CFBP498_RS06175 (CFBP8129_12460) - 1477744..1478667 (-) 924 WP_074065963.1 IS110 family transposase -
  CFBP498_RS06180 (CFBP8129_12480) - 1479341..1480216 (-) 876 WP_023904778.1 energy transducer TonB -
  CFBP498_RS06185 (CFBP8129_12490) gshB 1480213..1481163 (-) 951 WP_006450733.1 glutathione synthase -
  CFBP498_RS06190 (CFBP8129_12500) pilG 1481400..1481801 (+) 402 WP_023904776.1 twitching motility response regulator PilG Regulator
  CFBP498_RS06195 (CFBP8129_12510) - 1481819..1482181 (+) 363 WP_006450735.1 response regulator -
  CFBP498_RS06200 (CFBP8129_12520) - 1482181..1482711 (+) 531 WP_006450736.1 chemotaxis protein CheW -
  CFBP498_RS06205 (CFBP8129_12530) - 1482751..1484787 (+) 2037 WP_006450737.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14690.07 Da        Isoelectric Point: 7.1350

>NTDB_id=1132384 CFBP498_RS06190 WP_023904776.1 1481400..1481801(+) (pilG) [Xanthomonas hortorum pv. gardneri strain CFBP 8129]
MSEHIAAGGELAGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKSTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLSAIRTYVHA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=1132384 CFBP498_RS06190 WP_023904776.1 1481400..1481801(+) (pilG) [Xanthomonas hortorum pv. gardneri strain CFBP 8129]
ATGAGTGAACACATTGCTGCGGGTGGGGAACTCGCAGGACTGAAGGTGATGGTCATCGACGATTCGAAGACTATTCGCCG
CACCGCCGAAACGCTGCTCAAGCGAGAAGGGTGTGAAGTAGTGACAGCAACGGATGGTTTCGAGGCACTGGCCAAAATTG
CGGACCAACAACCTCAAATCATTTTTGTCGACATCATGATGCCGCGCCTGGATGGGTACCAGACGTGCGCGTTGATCAAG
GGCAACCAGCTCTTCAAGTCGACGCCGGTGATCATGTTGTCGTCCAAGGATGGCCTGTTCGACAAGGCACGCGGCCGCAT
CGTCGGCTCCGAGCAATATCTGACCAAGCCATTCACTCGTGAAGAACTACTGAGCGCGATTCGCACGTACGTCCACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.207

90.977

0.684

Multiple sequence alignment