Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | CHRYMOREF3P_RS09750 | Genome accession | NZ_LR824569 |
| Coordinates | 2092228..2092881 (+) | Length | 217 a.a. |
| NCBI ID | WP_180564504.1 | Uniprot ID | A0A7U7HDB9 |
| Organism | Chryseobacterium sp. JV274 strain F3_Prior isolate F3 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2087228..2097881
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CHRYMOREF3P_RS09740 (CHRYMOREF3P_2029) | aceB | 2088576..2090150 (-) | 1575 | WP_180564502.1 | malate synthase A | - |
| CHRYMOREF3P_RS09745 (CHRYMOREF3P_2030) | - | 2090277..2091755 (+) | 1479 | WP_180564503.1 | helix-turn-helix domain-containing protein | - |
| CHRYMOREF3P_RS09750 (CHRYMOREF3P_2031) | comF | 2092228..2092881 (+) | 654 | WP_180564504.1 | ComF family protein | Machinery gene |
| CHRYMOREF3P_RS09755 (CHRYMOREF3P_2032) | - | 2093002..2093688 (+) | 687 | WP_180564505.1 | alpha/beta fold hydrolase | - |
| CHRYMOREF3P_RS09760 (CHRYMOREF3P_2033) | upp | 2093690..2094340 (-) | 651 | WP_180564506.1 | uracil phosphoribosyltransferase | - |
| CHRYMOREF3P_RS09765 (CHRYMOREF3P_2034) | der | 2094503..2095813 (-) | 1311 | WP_077419113.1 | ribosome biogenesis GTPase Der | - |
| CHRYMOREF3P_RS09775 (CHRYMOREF3P_2035) | - | 2096402..2096650 (+) | 249 | WP_198424133.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25095.96 Da Isoelectric Point: 7.2227
>NTDB_id=1132364 CHRYMOREF3P_RS09750 WP_180564504.1 2092228..2092881(+) (comF) [Chryseobacterium sp. JV274 strain F3_Prior isolate F3]
MIVDLLFPNRCIHCNKIIDSELLVCDLCFSQLHFTHYSYFENNPIKEKCSLFFPIENTFALLQFEEESLSRQIIHELKYK
GREKAGKILADWTTERLDFKNEKPDLLVSVPLHPKKMKERGYNQLHLFTETLAAFYDIPFDHQLIKRNHYSKAQALKDKK
HRLEAVNTFSITQSVSGKHILLIDDVFTTGNTVSSVAWEILNAGNNKVSVLVIAIDV
MIVDLLFPNRCIHCNKIIDSELLVCDLCFSQLHFTHYSYFENNPIKEKCSLFFPIENTFALLQFEEESLSRQIIHELKYK
GREKAGKILADWTTERLDFKNEKPDLLVSVPLHPKKMKERGYNQLHLFTETLAAFYDIPFDHQLIKRNHYSKAQALKDKK
HRLEAVNTFSITQSVSGKHILLIDDVFTTGNTVSSVAWEILNAGNNKVSVLVIAIDV
Nucleotide
Download Length: 654 bp
>NTDB_id=1132364 CHRYMOREF3P_RS09750 WP_180564504.1 2092228..2092881(+) (comF) [Chryseobacterium sp. JV274 strain F3_Prior isolate F3]
ATGATAGTAGATTTATTGTTTCCGAACCGTTGTATCCACTGCAACAAAATCATTGATTCTGAACTTTTGGTATGTGATCT
TTGTTTTAGCCAGCTCCATTTTACCCACTATTCCTATTTTGAAAATAATCCGATTAAGGAGAAATGCAGTTTGTTTTTTC
CTATTGAAAACACCTTTGCTTTACTGCAATTTGAAGAGGAGAGCTTAAGCCGGCAGATTATCCATGAGCTGAAATACAAA
GGCCGGGAAAAAGCTGGAAAGATCCTTGCAGACTGGACCACAGAACGCCTGGACTTTAAGAACGAGAAACCTGATCTTTT
GGTAAGTGTACCGCTTCATCCAAAAAAAATGAAGGAACGTGGATACAACCAGCTTCATTTATTCACAGAAACCTTAGCGG
CATTTTATGACATCCCCTTTGATCATCAATTAATCAAAAGAAATCATTATTCAAAGGCACAGGCTTTAAAGGATAAGAAA
CACAGATTGGAAGCTGTCAACACATTCTCTATCACACAATCGGTTTCAGGAAAACATATTCTTCTGATTGATGATGTTTT
TACCACAGGGAATACCGTTTCATCGGTTGCATGGGAAATTTTAAATGCCGGAAATAACAAAGTGAGTGTATTAGTAATAG
CAATAGATGTTTAA
ATGATAGTAGATTTATTGTTTCCGAACCGTTGTATCCACTGCAACAAAATCATTGATTCTGAACTTTTGGTATGTGATCT
TTGTTTTAGCCAGCTCCATTTTACCCACTATTCCTATTTTGAAAATAATCCGATTAAGGAGAAATGCAGTTTGTTTTTTC
CTATTGAAAACACCTTTGCTTTACTGCAATTTGAAGAGGAGAGCTTAAGCCGGCAGATTATCCATGAGCTGAAATACAAA
GGCCGGGAAAAAGCTGGAAAGATCCTTGCAGACTGGACCACAGAACGCCTGGACTTTAAGAACGAGAAACCTGATCTTTT
GGTAAGTGTACCGCTTCATCCAAAAAAAATGAAGGAACGTGGATACAACCAGCTTCATTTATTCACAGAAACCTTAGCGG
CATTTTATGACATCCCCTTTGATCATCAATTAATCAAAAGAAATCATTATTCAAAGGCACAGGCTTTAAAGGATAAGAAA
CACAGATTGGAAGCTGTCAACACATTCTCTATCACACAATCGGTTTCAGGAAAACATATTCTTCTGATTGATGATGTTTT
TACCACAGGGAATACCGTTTCATCGGTTGCATGGGAAATTTTAAATGCCGGAAATAACAAAGTGAGTGTATTAGTAATAG
CAATAGATGTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
50 |
99.539 |
0.498 |