Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   LJDFIFNA_RS10560 Genome accession   NZ_LR822060
Coordinates   2103139..2104488 (+) Length   449 a.a.
NCBI ID   WP_000806247.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate P3.1     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
SCCmec 2103139..2112843 2103139..2104488 within 0


Gene organization within MGE regions


Location: 2103139..2112843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJDFIFNA_RS10560 (BKMNNEJI_02019) ccrA 2103139..2104488 (+) 1350 WP_000806247.1 cassette chromosome recombinase CcrA Machinery gene
  LJDFIFNA_RS10565 (BKMNNEJI_02020) ccrB 2104510..2106134 (+) 1625 Protein_2053 cassette chromosome recombinase CcrB -
  LJDFIFNA_RS10570 (BKMNNEJI_02021) - 2106600..2106950 (+) 351 WP_000859157.1 SAUGI family uracil-DNA glycosylase inhibitor -
  LJDFIFNA_RS10575 (BKMNNEJI_02023) - 2107037..2107348 (+) 312 WP_001024804.1 DUF960 family protein -
  LJDFIFNA_RS10580 (BKMNNEJI_02024) - 2107363..2107869 (+) 507 WP_001092195.1 DUF1643 domain-containing protein -
  LJDFIFNA_RS10585 (BKMNNEJI_02025) - 2107918..2109528 (+) 1611 Protein_2057 IS1182 family transposase -
  LJDFIFNA_RS10590 (BKMNNEJI_02026) - 2109519..2109761 (-) 243 Protein_2058 type I restriction enzyme endonuclease domain-containing protein -
  LJDFIFNA_RS10595 (BKMNNEJI_02027) - 2109751..2110737 (-) 987 WP_001549960.1 beta-lactam sensor/signal transducer MecR1 -
  LJDFIFNA_RS10600 (BKMNNEJI_02028) mecA 2110834..2112843 (+) 2010 WP_078066155.1 PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52580.41 Da        Isoelectric Point: 9.9370

>NTDB_id=1132246 LJDFIFNA_RS10560 WP_000806247.1 2103139..2104488(+) (ccrA) [Staphylococcus aureus isolate P3.1]
MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYH
NGTFTIDTVKAPTVKAVFNYYLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
YEEAQVTRTQKPVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKHHTLRYYVCPQNMNASRFVCEFKGINAQELETSVLAT
CQDFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHEQLIEKLAQDKIDAETFREQTQSLRQQSKPISSISTYQIRKAFQ
NIIQQRFTLNMLYPYIDEINISKNKSLAGIYFKNEPLNIVKQTMELSIV

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1132246 LJDFIFNA_RS10560 WP_000806247.1 2103139..2104488(+) (ccrA) [Staphylococcus aureus isolate P3.1]
ATGAAACAAGCAATAGGTTACTTACGACAGAGCACTACAAAGCAACAATCCTTAGCAGCACAAAAACAAACCATCGAGGC
ATTAGCCAAAAAACATAATATTCAATACATTACCTTTTATAGCGATAAGCAATCAGGACGCACTGATAAGCGGAACGGTT
ACCAACAAATTACTGAACTGATTCAACAAGGACAATGTGATGTATTATGTTGTTACAGATTAAACCGACTTCATCGCAAT
CTTAAAAATGCATTAAAACTCATGAAATTGTGTCAAAAATACCATGTCCATATCTTAAGCGTTCATGATGGCTATTTTGA
TATGGATAAAGCATTCGATCGGCTCAAACTCAATATTTTCATCAGCTTGGCCGAACTAGAATCTGATAATATAGGCGAAC
AAGTCAAAAATGGAATCAAAGAAAAAGCGAAACAAGGTAAAATGATTACAACACATGCACCCTTTGGGTATCACTATCAT
AATGGTACTTTCACGATAGACACAGTAAAAGCACCAACAGTAAAAGCTGTGTTCAATTATTACCTTCAAGGTTATGGTTA
TAAAAAAATTGCGCAATACTTAGAAGCTGATGATAAATTCATTAATCGTAAGCCCTATCAAGTGCGTAATATTATCCTTA
ACCCTAATTACTGTGGCCGTGTTATCAATCAATACGGACAATATGAAAACATGTTCCCAGCTATTGTCAGTACAACGATA
TACGAAGAAGCTCAAGTTACCCGAACTCAGAAACCAGTAAAACGTAAGCCGTCAGAAAACCAACTCAAACAAAAAATCAA
ATGTCCTTATTGTGATTCAACACTAACTAATATGACCATTAGAAAAAAGCACCATACATTACGTTATTATGTTTGTCCTC
AAAATATGAATGCATCTCGTTTTGTCTGTGAATTCAAAGGGATCAACGCACAAGAATTAGAAACAAGTGTTTTAGCGACT
TGTCAGGACTTCTTTCAAAATCAACAGCTCTATTCAAAAATAAACCATACTATTCAACAACGACTCAAAAGACAAAGAGA
TATAGAAACTAAAACTACACTCAATCACGAGCAGCTGATAGAAAAATTAGCCCAAGACAAAATTGATGCAGAAACGTTCA
GAGAACAAACGCAATCATTACGTCAGCAATCAAAACCTATATCATCAATCAGTACGTATCAAATTCGAAAAGCTTTCCAA
AACATCATTCAACAACGTTTCACGCTAAACATGTTGTACCCCTATATTGATGAAATTAATATTTCTAAAAATAAAAGCCT
CGCTGGCATCTATTTCAAAAATGAACCACTGAATATTGTAAAGCAGACTATGGAATTATCAATTGTATAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(170-249)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

100

100

1
  ccrA Staphylococcus aureus N315

74.833

100

0.748

Multiple sequence alignment