Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H1X04_RS08330 Genome accession   NZ_LR822043
Coordinates   1620418..1621779 (-) Length   453 a.a.
NCBI ID   WP_082302317.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_2101     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1615418..1626779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X04_RS08300 - 1616012..1617039 (-) 1028 Protein_1577 peptide ABC transporter ATP-binding protein -
  H1X04_RS08305 (STHERMO_1840) rplA 1617158..1617847 (-) 690 WP_002946412.1 50S ribosomal protein L1 -
  H1X04_RS08310 (STHERMO_1841) rplK 1617947..1618372 (-) 426 WP_002953535.1 50S ribosomal protein L11 -
  H1X04_RS08315 (STHERMO_1842) - 1618544..1618897 (+) 354 WP_002953536.1 DUF3397 domain-containing protein -
  H1X04_RS08320 (STHERMO_1843) - 1618989..1619486 (-) 498 WP_002947059.1 beta-class carbonic anhydrase -
  H1X04_RS08325 - 1619654..1620329 (-) 676 Protein_1582 AIM24 family protein -
  H1X04_RS08330 (STHERMO_1848) radA 1620418..1621779 (-) 1362 WP_082302317.1 DNA repair protein RadA Machinery gene
  H1X04_RS10115 - 1621815..1621956 (-) 142 Protein_1584 cysteine hydrolase -
  H1X04_RS08335 (STHERMO_1849) - 1621957..1622403 (-) 447 WP_002947069.1 dUTP diphosphatase -
  H1X04_RS08340 - 1622617..1623212 (+) 596 Protein_1586 NADPH-dependent FMN reductase -
  H1X04_RS08345 (STHERMO_1853) - 1623240..1624210 (+) 971 Protein_1587 PAS domain-containing protein -
  H1X04_RS08350 - 1624328..1625118 (+) 791 Protein_1588 formate/nitrite transporter family protein -
  H1X04_RS08355 (STHERMO_1856) - 1625127..1625700 (+) 574 Protein_1589 MptD family putative ECF transporter S component -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49450.86 Da        Isoelectric Point: 6.6528

>NTDB_id=1132201 H1X04_RS08330 WP_082302317.1 1620418..1621779(-) (radA) [Streptococcus thermophilus isolate STH_CIRM_2101]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEMQEVKNARVSLTGEKSKPTKLKEVSSISYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
GIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELIQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFVGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYVPKNSLHGMKIPEGIQVIGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1132201 H1X04_RS08330 WP_082302317.1 1620418..1621779(-) (radA) [Streptococcus thermophilus isolate STH_CIRM_2101]
ATAGCTAAGAAAAAATCAACTTTTGTTTGTAGAGAATGTGGCTACAATTCACCCAAATATCTAGGGCGCTGTCCCAATTG
TTCTTCTTGGTCCTCTTTTGAGGAAGAGGTTGAGATGCAGGAGGTTAAAAATGCCCGTGTCAGTTTGACGGGTGAAAAGT
CCAAACCTACTAAGTTAAAAGAAGTCTCTTCAATTAGTTATGCCCGCATAAAAACCGATATGGACGAGTTTAACCGTGTT
TTAGGTGGCGGTGTGGTTCCGGGGAGTTTGGTTCTTATTGGAGGAGATCCAGGAATAGGGAAATCGACCCTCCTCTTACA
GGTGTCAACACAGCTGGCTAACAAGGGAACTGTCCTCTATGTTTCTGGGGAAGAATCGGCCGAGCAAATCAAATTGCGGA
GTGAACGTTTAGGTGATATTGATAACGAATTTTATCTGTATGCTGAGACCAATATGCAAGCAGTCCGTAGTCAAGTGGAG
GGTATCAAACCCGATTTCCTCATTATTGATTCTATTCAGACCATCATGAGCCCAGAGATCTCTGGCGTTCAAGGTTCTGT
TTCCCAGGTTCGTGAAGTAACTGCCGAACTCATACAGATTGCCAAAACCAATAACATTGCCACTTTCATTGTTGGGCATG
TGACCAAGGAGGGACAGCTGGCTGGACCACGTATGTTGGAGCACATGGTGGATACTGTGCTTTATTTTGAGGGGGAACGT
CATCATACCTTCCGTATTCTGAGGGCAGTTAAAAACCGTTTTGGTTCAACCAATGAGATTGGGATTTTTGAAATGCAGTC
AGGTGGTCTGGTCGAGGTACTAAACCCTAGCCAAGTTTTCTTAGAAGAACGCCTAGACGGTGCCACAGGTTCTGCCATTG
TTGTCACAATGGAGGGGAGTCGACCTATCCTAGCTGAGGTTCAAGCTTTGGTGACACCGACCGTCTTTGGTAACGCAAAG
CGGACAACGACGGGACTGGACTTTAACCGTGTCAGCCTTATCATGGCTGTCTTAGAGAAACGTTGCGGCCTTCTTCTCCA
AAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTCAAGTTGGACGAGCCAGCTATTGACCTTGCAGTTGCCGTTGCTA
TCGCTTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCCTTCGTAGGAGAAATTGGCTTGACCGGAGAGATTCGT
CGTGTGACTCGTATTGAGCAGCGTATCAATGAAGCCGCTAAACTAGGTTTTACTAAAATTTATGTTCCTAAAAATTCGCT
TCATGGCATGAAGATTCCAGAAGGTATCCAGGTCATTGGGGTCACAACGGTAGGAGAAGTACTCAAAAAAGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(61-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.742

100

0.887
  radA Streptococcus pneumoniae D39

88.742

100

0.887
  radA Streptococcus pneumoniae R6

88.742

100

0.887
  radA Streptococcus pneumoniae TIGR4

88.742

100

0.887
  radA Streptococcus mitis NCTC 12261

88.742

100

0.887
  radA Streptococcus mitis SK321

88.742

100

0.887
  radA Bacillus subtilis subsp. subtilis str. 168

61.148

100

0.611

Multiple sequence alignment