Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   H1W86_RS05250 Genome accession   NZ_LR822042
Coordinates   1001058..1001870 (-) Length   270 a.a.
NCBI ID   WP_011681204.1    Uniprot ID   A0AAP2RND8
Organism   Streptococcus thermophilus isolate STH_CIRM_1358     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 996058..1006870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W86_RS05225 (STHERMO_1136) - 996996..997382 (-) 387 WP_002953113.1 DUF1934 domain-containing protein -
  H1W86_RS05230 - 997474..998352 (-) 879 Protein_988 GNAT family N-acetyltransferase -
  H1W86_RS05235 (STHERMO_1139) yidA 998560..999369 (+) 810 WP_180479435.1 sugar-phosphatase -
  H1W86_RS05240 (STHERMO_1140) - 999371..1000585 (+) 1215 WP_004197368.1 aminoacyltransferase -
  H1W86_RS05245 (STHERMO_1141) - 1000637..1000998 (-) 362 Protein_991 YbaN family protein -
  H1W86_RS05250 (STHERMO_1142) vicX 1001058..1001870 (-) 813 WP_011681204.1 MBL fold metallo-hydrolase Regulator
  H1W86_RS05255 (STHERMO_1143) vicK 1001876..1003216 (-) 1341 WP_011681205.1 cell wall metabolism sensor histidine kinase VicK Regulator
  H1W86_RS05260 (STHERMO_1144) vicR 1003209..1003916 (-) 708 WP_011681206.1 response regulator YycF Regulator
  H1W86_RS05265 (STHERMO_1145) - 1004443..1005210 (+) 768 WP_011681207.1 amino acid ABC transporter ATP-binding protein -
  H1W86_RS05270 (STHERMO_1146) - 1005222..1006055 (+) 834 WP_014608373.1 transporter substrate-binding domain-containing protein -
  H1W86_RS05275 (STHERMO_1147) - 1006073..1006771 (+) 699 WP_014608374.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30045.01 Da        Isoelectric Point: 5.5779

>NTDB_id=1132121 H1W86_RS05250 WP_011681204.1 1001058..1001870(-) (vicX) [Streptococcus thermophilus isolate STH_CIRM_1358]
MTSELGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGM
DIYANEKTWQIMDSKNMLGKVDNSQKHIFSRGKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMA
GLIENADGYLIESNHDIEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAYMTME
NQLARADFGVGTDFKIFGTSPDTATPLTDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=1132121 H1W86_RS05250 WP_011681204.1 1001058..1001870(-) (vicX) [Streptococcus thermophilus isolate STH_CIRM_1358]
ATGACCTCAGAATTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACCGGGAATTCCTTTTATTTGGAAACTCCAGA
AAAGAAGATTCTAGTGGATGCTGGTTTATCAGGAAAAAAAATTACAAGTTTGCTAGCGGAGATTGACCGTGATCCAAGTG
ATCTTGATGCTATCTTAGTAACACATGAACACAAGGACCATATCCATGGTGTAGGTGTTTTAGCTCGTAAATACGGCATG
GATATATACGCCAATGAGAAAACCTGGCAAATTATGGATAGTAAGAATATGCTAGGTAAGGTTGATAATAGTCAGAAACA
TATTTTTTCTCGCGGTAAGCTTCTAACCTTTGGTGATATCGACATTGAATCTTTCGGAGTTAGTCATGATGCCATTGATC
CACAATTTTACCGCTTTATGAAAGACGGAAAGAGCTTTGTCATGTTGACGGATACAGGCTATGTTTCAGACCGTATGGCT
GGTCTTATTGAAAATGCTGATGGCTATCTGATTGAATCTAATCATGATATTGAAATCTTGAGAGCAGGTTCTTATCCTTG
GTCAACCAAGCAACGTATCCTCTCTGATCAGGGTCACTTGTGTAATGAGGATGGAGCCGATGCTATGATTCGTACCATCG
GTAATAAAACTAAAAAGATTTATCTGGGTCACCTTTCTAAAGAAAATAATATCAAGGAATTGGCCTACATGACGATGGAA
AATCAGTTGGCTCGCGCTGACTTTGGTGTTGGAACTGACTTTAAGATTTTTGGTACCTCACCAGATACGGCGACCCCACT
AACAGATATTTAG

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.985

99.259

0.774

Multiple sequence alignment