Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   H1W86_RS02200 Genome accession   NZ_LR822042
Coordinates   406930..407373 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1358     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 401930..412373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W86_RS02180 (STHERMO_0441) - 402450..403204 (-) 755 Protein_379 NUDIX domain-containing protein -
  H1W86_RS02185 (STHERMO_0442) - 403268..404374 (-) 1107 WP_014608024.1 AAA family ATPase -
  H1W86_RS02190 (STHERMO_0443) gdhA 404718..406070 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  H1W86_RS02195 (STHERMO_0444) - 406329..406739 (+) 411 WP_011680804.1 peptide deformylase -
  H1W86_RS02200 (STHERMO_0445) rcrR 406930..407373 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  H1W86_RS02205 (STHERMO_0446) rcrP 407377..409191 (+) 1815 WP_180479609.1 ABC transporter ATP-binding protein Regulator
  H1W86_RS02210 (STHERMO_0447) rcrQ 409181..410959 (+) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  H1W86_RS02215 (STHERMO_0448) - 411115..411486 (+) 372 WP_224103327.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=1132109 H1W86_RS02200 WP_002945408.1 406930..407373(+) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_1358]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=1132109 H1W86_RS02200 WP_002945408.1 406930..407373(+) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_1358]
ATGCATGGTAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGTGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment