Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   H1W80_RS05320 Genome accession   NZ_LR822040
Coordinates   1004460..1005272 (-) Length   270 a.a.
NCBI ID   WP_011681204.1    Uniprot ID   A0AAP2RND8
Organism   Streptococcus thermophilus isolate STH_CIRM_1125     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 999460..1010272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W80_RS05295 (STHERMO_1177) - 1000396..1000782 (-) 387 WP_180473246.1 DUF1934 domain-containing protein -
  H1W80_RS05300 - 1000840..1001754 (-) 915 Protein_983 GNAT family N-acetyltransferase -
  H1W80_RS05305 (STHERMO_1181) yidA 1001962..1002771 (+) 810 WP_011226081.1 sugar-phosphatase -
  H1W80_RS05310 (STHERMO_1182) - 1002773..1003987 (+) 1215 WP_087009967.1 aminoacyltransferase -
  H1W80_RS05315 - 1004039..1004400 (-) 362 Protein_986 YbaN family protein -
  H1W80_RS05320 (STHERMO_1183) vicX 1004460..1005272 (-) 813 WP_011681204.1 MBL fold metallo-hydrolase Regulator
  H1W80_RS05325 (STHERMO_1184) vicK 1005278..1006618 (-) 1341 WP_011227273.1 cell wall metabolism sensor histidine kinase VicK Regulator
  H1W80_RS05330 (STHERMO_1185) vicR 1006611..1007318 (-) 708 WP_011227274.1 response regulator YycF Regulator
  H1W80_RS05335 - 1007844..1008611 (+) 768 Protein_990 amino acid ABC transporter ATP-binding protein -
  H1W80_RS05340 (STHERMO_1189) - 1008623..1009456 (+) 834 WP_087009968.1 transporter substrate-binding domain-containing protein -
  H1W80_RS05345 (STHERMO_1190) - 1009474..1010172 (+) 699 WP_087009969.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30045.01 Da        Isoelectric Point: 5.5779

>NTDB_id=1131999 H1W80_RS05320 WP_011681204.1 1004460..1005272(-) (vicX) [Streptococcus thermophilus isolate STH_CIRM_1125]
MTSELGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGM
DIYANEKTWQIMDSKNMLGKVDNSQKHIFSRGKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMA
GLIENADGYLIESNHDIEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAYMTME
NQLARADFGVGTDFKIFGTSPDTATPLTDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=1131999 H1W80_RS05320 WP_011681204.1 1004460..1005272(-) (vicX) [Streptococcus thermophilus isolate STH_CIRM_1125]
ATGACCTCAGAATTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACCGGGAATTCCTTTTATTTGGAAACTCCAGA
AAAGAAGATTCTAGTGGATGCTGGTTTATCAGGAAAAAAAATTACAAGTTTGCTAGCGGAGATTGACCGTGATCCAAGTG
ATCTTGATGCTATCTTAGTAACACATGAACACAAGGACCATATCCATGGTGTAGGTGTTTTAGCTCGTAAATACGGCATG
GATATATACGCCAATGAGAAAACCTGGCAAATTATGGATAGTAAGAATATGCTAGGTAAGGTTGATAATAGTCAGAAACA
TATTTTTTCTCGCGGTAAGCTTCTAACCTTTGGTGATATCGACATTGAATCTTTCGGAGTTAGTCATGATGCCATTGATC
CACAATTTTACCGCTTTATGAAAGACGGAAAGAGCTTTGTCATGTTGACGGATACAGGCTATGTTTCAGACCGTATGGCT
GGTCTTATTGAAAATGCTGATGGCTATCTGATTGAATCTAATCATGATATTGAAATCTTGAGAGCAGGTTCTTATCCTTG
GTCAACCAAGCAACGTATCCTCTCTGATCAGGGTCACTTGTGTAATGAGGATGGAGCCGATGCTATGATTCGTACCATCG
GTAATAAAACTAAAAAGATTTATCTGGGTCACCTTTCCAAAGAAAATAATATCAAGGAATTGGCCTACATGACGATGGAA
AATCAGTTGGCTCGTGCTGACTTTGGTGTTGGAACTGACTTTAAGATTTTTGGTACCTCACCAGATACGGCGACCCCACT
AACAGATATTTAG

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.985

99.259

0.774

Multiple sequence alignment