Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H1W87_RS08425 Genome accession   NZ_LR822037
Coordinates   1625940..1627301 (-) Length   453 a.a.
NCBI ID   WP_082309145.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1121     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1620940..1632301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W87_RS08395 - 1621534..1622561 (-) 1028 Protein_1601 peptide ABC transporter ATP-binding protein -
  H1W87_RS08400 (STHERMO_1887) rplA 1622680..1623369 (-) 690 WP_002946412.1 50S ribosomal protein L1 -
  H1W87_RS08405 (STHERMO_1888) rplK 1623469..1623894 (-) 426 WP_002953535.1 50S ribosomal protein L11 -
  H1W87_RS08410 (STHERMO_1889) - 1624066..1624419 (+) 354 WP_002953536.1 DUF3397 domain-containing protein -
  H1W87_RS08415 (STHERMO_1890) - 1624511..1625008 (-) 498 WP_180477174.1 beta-class carbonic anhydrase -
  H1W87_RS08420 - 1625175..1625851 (-) 677 Protein_1606 TIGR00266 family protein -
  H1W87_RS08425 (STHERMO_1894) radA 1625940..1627301 (-) 1362 WP_082309145.1 DNA repair protein RadA Machinery gene
  H1W87_RS08430 (STHERMO_1895) - 1627479..1627925 (-) 447 WP_065972604.1 dUTP diphosphatase -
  H1W87_RS08435 - 1628139..1628743 (+) 605 Protein_1609 NADPH-dependent FMN reductase -
  H1W87_RS08440 - 1628762..1629733 (+) 972 Protein_1610 PAS domain-containing protein -
  H1W87_RS08445 - 1629851..1630643 (+) 793 Protein_1611 formate/nitrite transporter family protein -
  H1W87_RS08450 (STHERMO_1904) - 1630652..1631225 (+) 574 Protein_1612 MptD family putative ECF transporter S component -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49432.83 Da        Isoelectric Point: 6.6528

>NTDB_id=1131903 H1W87_RS08425 WP_082309145.1 1625940..1627301(-) (radA) [Streptococcus thermophilus isolate STH_CIRM_1121]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQELKNARVSLTGEKSKPTKLKEVSSISYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
GIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELIQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFVGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYVPKNSLHGMKIPEGIQVIGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1131903 H1W87_RS08425 WP_082309145.1 1625940..1627301(-) (radA) [Streptococcus thermophilus isolate STH_CIRM_1121]
ATAGCTAAGAAAAAATCAACTTTTGTTTGTAGAGAATGTGGCTACAATTCACCCAAATATCTAGGGCGCTGTCCCAATTG
TTCTTCTTGGTCCTCTTTTGAGGAAGAGGTTGAGGTGCAGGAGCTTAAAAATGCCCGTGTCAGTTTGACGGGTGAAAAGT
CCAAACCTACTAAGTTAAAAGAAGTCTCTTCAATTAGTTATGCCCGCATAAAAACCGATATGGACGAGTTTAACCGTGTT
TTAGGTGGCGGTGTGGTTCCGGGGAGTTTGGTTCTTATTGGAGGAGATCCAGGAATAGGGAAATCGACCCTCCTCTTACA
GGTGTCAACACAGCTGGCTAACAAGGGAACTGTCCTCTATGTTTCTGGGGAAGAATCGGCCGAGCAAATCAAATTGCGGA
GTGAACGTTTAGGTGATATTGATAACGAATTTTATCTGTATGCTGAGACCAATATGCAAGCAGTCCGTAGTCAAGTGGAG
GGTATCAAACCCGATTTCCTCATTATTGATTCTATTCAGACCATCATGAGCCCAGAGATCTCTGGCGTTCAAGGTTCTGT
TTCCCAGGTTCGTGAAGTAACTGCCGAACTCATACAGATTGCCAAAACCAATAACATTGCCACTTTTATTGTTGGGCATG
TGACCAAGGAGGGACAGCTGGCTGGACCACGTATGTTGGAGCACATGGTGGATACTGTGCTTTATTTTGAGGGGGAACGT
CATCATACCTTCCGTATTCTGAGGGCAGTTAAAAACCGTTTTGGTTCAACCAATGAGATTGGTATTTTTGAAATGCAGTC
AGGTGGTCTGGTCGAGGTACTAAACCCTAGCCAAGTTTTCTTAGAAGAACGCCTAGACGGTGCCACAGGTTCTGCCATTG
TTGTCACAATGGAGGGGAGTCGACCTATCCTAGCTGAGGTTCAAGCTTTGGTGACACCGACCGTCTTTGGTAACGCAAAG
CGGACAACGACGGGACTGGACTTTAACCGTGTCAGTCTTATCATGGCTGTCTTAGAGAAACGTTGCGGCCTTCTTCTCCA
AAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTCAAGTTGGACGAGCCAGCTATTGACCTTGCAGTTGCCGTTGCTA
TCGCTTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCCTTCGTAGGAGAAATTGGCTTGACCGGAGAGATTCGT
CGTGTGACTCGTATTGAGCAGCGTATCAATGAAGCCGCTAAACTAGGTTTTACTAAGATTTATGTTCCTAAAAACTCGCT
TCATGGCATGAAGATTCCAGAAGGTATCCAGGTCATTGGGGTCACAACGGTAGGAGAAGTACTCAAAAAAGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(61-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.742

100

0.887
  radA Streptococcus pneumoniae D39

88.742

100

0.887
  radA Streptococcus pneumoniae R6

88.742

100

0.887
  radA Streptococcus pneumoniae TIGR4

88.742

100

0.887
  radA Streptococcus mitis NCTC 12261

88.742

100

0.887
  radA Streptococcus mitis SK321

88.742

100

0.887
  radA Bacillus subtilis subsp. subtilis str. 168

61.148

100

0.611

Multiple sequence alignment