Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   H1W87_RS07425 Genome accession   NZ_LR822037
Coordinates   1420356..1421087 (-) Length   243 a.a.
NCBI ID   WP_002951673.1    Uniprot ID   A0AAP2RM94
Organism   Streptococcus thermophilus isolate STH_CIRM_1121     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1415356..1426087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W87_RS07400 (STHERMO_1649) - 1416405..1417586 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  H1W87_RS07410 (STHERMO_1650) trmB 1417822..1418463 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  H1W87_RS07415 (STHERMO_1651) ccrZ 1418473..1419264 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  H1W87_RS07420 (STHERMO_1652) pptB 1419322..1420356 (-) 1035 WP_375708305.1 ABC transporter permease Regulator
  H1W87_RS07425 (STHERMO_1653) pptA 1420356..1421087 (-) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  H1W87_RS07430 (STHERMO_1654) - 1421152..1421571 (+) 420 WP_180478189.1 HIT family protein -
  H1W87_RS07435 (STHERMO_1655) - 1421568..1421867 (+) 300 WP_141326672.1 hypothetical protein -
  H1W87_RS09785 (STHERMO_1656) - 1422428..1422598 (-) 171 WP_011226439.1 hypothetical protein -
  H1W87_RS07445 (STHERMO_1657) - 1422668..1423303 (-) 636 WP_014727665.1 DUF4230 domain-containing protein -
  H1W87_RS09990 - 1423322..1423447 (-) 126 WP_011681534.1 hypothetical protein -
  H1W87_RS07450 (STHERMO_1658) - 1423857..1425956 (-) 2100 WP_022096464.1 ATP-dependent Clp protease ATP-binding subunit -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26830.05 Da        Isoelectric Point: 4.4606

>NTDB_id=1131899 H1W87_RS07425 WP_002951673.1 1420356..1421087(-) (pptA) [Streptococcus thermophilus isolate STH_CIRM_1121]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDPASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKANGKSILMSTHVLDSAEKMCDRFVILHHGQILAQGTIDELRQTFGDSSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1131899 H1W87_RS07425 WP_002951673.1 1420356..1421087(-) (pptA) [Streptococcus thermophilus isolate STH_CIRM_1121]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTACGCTAACATTCCCGTCCTAAAAGATGTGACTTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGGAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCCT
ATGGAGGACAGATTGCCATTGATGGGTTAACTATTCAACAAGATCCAGCTAGCTATCGTCAGAAGATTGGCTATATTCCT
GAAACGCCAAGTCTTTATGAAGAATTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGTCTTGATGTGAC
TGAGGGTATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGCTTAGATGAAAAGTTGGACTGGTTCCCGACTCAGTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCCTTTATTGTGAATCCAAGTCTTTTCATTGTTGATGAGCCCTTT
TTGGGATTGGATCCCTTGGCGATTTCTGATTTGATTGAGCTTCTGGCTGAGGAAAAAGCCAATGGCAAGTCTATTCTCAT
GTCGACTCACGTTTTGGATTCAGCTGAGAAGATGTGTGATCGCTTTGTGATTTTGCACCATGGACAGATCTTGGCACAGG
GGACGATTGATGAGCTTCGTCAGACCTTTGGTGACAGTAGTGCTAGTCTTAACGATATCTATATGCAGTTGACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

100

100

1
  pptA Streptococcus salivarius strain HSISS4

97.119

100

0.971

Multiple sequence alignment