Detailed information NTG1131835

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: H1W84_RS06820
• Genome accession: NZ_LR822036
• Coordinates: 1304006..1304932 (-)
• Length: 308 a.a.
• NCBI ID: WP_002946409.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_1055
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1299006..1309932

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1W84_RS06790 (STHERMO_1496)	-	1299084..1299878 (-)	795	WP_011681412.1	HAD-IIB family hydrolase	-
H1W84_RS06795 (STHERMO_1497)	-	1300062..1300439 (+)	378	WP_011681413.1	GntR family transcriptional regulator	-
H1W84_RS06800 (STHERMO_1498)	-	1300444..1301142 (+)	699	WP_014608540.1	ABC transporter ATP-binding protein	-
H1W84_RS06805 (STHERMO_1499)	-	1301154..1301939 (+)	786	WP_002951425.1	hypothetical protein	-
H1W84_RS06810 (STHERMO_1500)	amiF	1301989..1302918 (-)	930	WP_002951426.1	ATP-binding cassette domain-containing protein	Regulator
H1W84_RS06815 (STHERMO_1501)	amiE	1302911..1303996 (-)	1086	WP_011226304.1	ABC transporter ATP-binding protein	Regulator
H1W84_RS06820 (STHERMO_1502)	amiD	1304006..1304932 (-)	927	WP_002946409.1	oligopeptide ABC transporter permease OppC	Regulator
H1W84_RS06825 (STHERMO_1503)	amiC	1304932..1306425 (-)	1494	WP_014608541.1	ABC transporter permease	Regulator
H1W84_RS06830 (STHERMO_1504)	amiA	1306487..1308454 (-)	1968	WP_014621802.1	peptide ABC transporter substrate-binding protein	Regulator

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34694.85 Da
• Isoelectric Point: 9.7054

>NTDB_id=1131835 H1W84_RS06820 WP_002946409.1 1304006..1304932(-) (amiD) [Streptococcus thermophilus isolate STH_CIRM_1055]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide

• Length: 927 bp

>NTDB_id=1131835 H1W84_RS06820 WP_002946409.1 1304006..1304932(-) (amiD) [Streptococcus thermophilus isolate STH_CIRM_1055]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-71)

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (125-306)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus thermophilus LMG 18311	100	100	1
amiD	Streptococcus thermophilus LMD-9	100	100	1
amiD	Streptococcus salivarius strain HSISS4	96.429	100	0.964