Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   H1X38_RS06820 Genome accession   NZ_LR822035
Coordinates   1319512..1320441 (-) Length   309 a.a.
NCBI ID   WP_014727621.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1051     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1314512..1325441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X38_RS06795 (STHERMO_1517) - 1315798..1316613 (-) 816 WP_014608539.1 Cof-type HAD-IIB family hydrolase -
  H1X38_RS06800 (STHERMO_1518) - 1316606..1317400 (-) 795 WP_014727618.1 HAD-IIB family hydrolase -
  H1X38_RS06805 (STHERMO_1519) - 1317585..1317962 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  H1X38_RS06810 (STHERMO_1520) - 1317967..1318665 (+) 699 WP_014727619.1 ABC transporter ATP-binding protein -
  H1X38_RS06815 (STHERMO_1521) - 1318677..1319462 (+) 786 WP_014727620.1 hypothetical protein -
  H1X38_RS06820 (STHERMO_1522) amiF 1319512..1320441 (-) 930 WP_014727621.1 ATP-binding cassette domain-containing protein Regulator
  H1X38_RS06825 (STHERMO_1523) amiE 1320434..1321519 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  H1X38_RS06830 (STHERMO_1524) amiD 1321529..1322455 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  H1X38_RS06835 (STHERMO_1525) amiC 1322455..1323948 (-) 1494 WP_014608541.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35157.25 Da        Isoelectric Point: 6.5987

>NTDB_id=1131773 H1X38_RS06820 WP_014727621.1 1319512..1320441(-) (amiF) [Streptococcus thermophilus isolate STH_CIRM_1051]
MPEKLVEVKDVEISFGEGRKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKTEIDTYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=1131773 H1X38_RS06820 WP_014727621.1 1319512..1320441(-) (amiF) [Streptococcus thermophilus isolate STH_CIRM_1051]
ATGCCTGAGAAATTAGTTGAAGTAAAAGATGTGGAAATTTCCTTCGGCGAAGGAAGAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATTGGACGTG
CCATTATCGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGGAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATTTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGCCCAGGTCACTTCGTTT
GGGGTAACAAGACAGAAATTGATACTTATCGTAAAGAACAAAGTAAGTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(26-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

99.676

100

0.997
  amiF Streptococcus thermophilus LMD-9

99.353

100

0.994
  amiF Streptococcus salivarius strain HSISS4

97.735

100

0.977

Multiple sequence alignment