Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   H1X13_RS09665 Genome accession   NZ_LR822034
Coordinates   1864343..1865110 (+) Length   255 a.a.
NCBI ID   WP_176243298.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1049     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1859343..1870110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X13_RS09650 (STHERMO_2154) - 1861659..1862342 (-) 684 WP_096811735.1 YoaK family protein -
  H1X13_RS09655 (STHERMO_2155) rlmH 1862358..1862837 (-) 480 WP_084829945.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  H1X13_RS09660 (STHERMO_2156) htrA 1863042..1864277 (+) 1236 WP_176243297.1 S1C family serine protease Regulator
  H1X13_RS09665 (STHERMO_2157) spo0J 1864343..1865110 (+) 768 WP_176243298.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29433.78 Da        Isoelectric Point: 9.6649

>NTDB_id=1131736 H1X13_RS09665 WP_176243298.1 1864343..1865110(+) (spo0J) [Streptococcus thermophilus isolate STH_CIRM_1049]
MSEQLKTLSISEIYPNPFQPRLKFSDEELVELSQSISENGLIQPIIVRKSDIIGYELIAGERRLRACKRLGMTEIPAVVK
EVTDQESRKQAIIENLQRSNLNPIEEAKAYRNLIDDLTYSHEELAKAMGKSRPYISNALRLLQLPREIQTSIENGSLSQG
HARALLAIEDSRKQLTIFQQVVAERWSVRTLEKKLQELPRKQKSKKDTHVKDKEKELERSLGLPITLRYHKNHSGTIQIH
FSTEEDFNRIINKLI

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1131736 H1X13_RS09665 WP_176243298.1 1864343..1865110(+) (spo0J) [Streptococcus thermophilus isolate STH_CIRM_1049]
ATGTCAGAACAACTCAAAACTTTATCTATTAGTGAAATTTACCCCAATCCTTTTCAACCTCGTCTAAAATTCTCCGATGA
AGAGTTAGTAGAACTAAGTCAATCAATATCAGAAAATGGTTTAATACAGCCAATTATTGTACGAAAATCTGACATTATTG
GTTATGAACTAATTGCTGGAGAAAGACGTTTACGAGCCTGTAAACGTTTAGGGATGACAGAAATCCCTGCAGTTGTAAAG
GAAGTTACAGATCAAGAGAGTCGTAAACAAGCTATTATTGAAAATCTACAACGATCAAATCTCAATCCTATTGAAGAAGC
AAAGGCCTATCGTAATTTAATTGATGATTTAACTTATAGTCACGAGGAGCTCGCTAAAGCTATGGGAAAATCTAGACCAT
ATATTAGTAACGCTCTTAGACTACTACAACTTCCGCGAGAGATACAAACGAGTATTGAAAACGGAAGTCTGAGTCAGGGA
CATGCTAGAGCACTCTTAGCTATTGAGGATTCTCGAAAGCAGTTAACCATCTTTCAGCAGGTTGTGGCTGAAAGATGGTC
TGTTCGTACTCTAGAAAAAAAACTTCAGGAACTTCCTAGAAAACAAAAATCTAAAAAAGATACCCATGTAAAAGATAAAG
AAAAAGAACTTGAAAGATCACTAGGTCTCCCCATAACTCTACGTTATCACAAAAATCACTCAGGAACGATTCAAATACAC
TTTTCGACAGAAGAAGATTTTAACAGAATTATCAACAAGCTTATCTAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(8-95)

HTH domain found in ParB protein (HTH_ParB)

(147-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

56.863

100

0.569

Multiple sequence alignment