Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H1X13_RS08725 Genome accession   NZ_LR822034
Coordinates   1701522..1702883 (-) Length   453 a.a.
NCBI ID   WP_080998440.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1049     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1696522..1707883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X13_RS08695 - 1697120..1698147 (-) 1028 Protein_1678 peptide ABC transporter ATP-binding protein -
  H1X13_RS08700 (STHERMO_1946) rplA 1698266..1698955 (-) 690 WP_002946412.1 50S ribosomal protein L1 -
  H1X13_RS08705 (STHERMO_1947) rplK 1699055..1699480 (-) 426 WP_002953535.1 50S ribosomal protein L11 -
  H1X13_RS08710 (STHERMO_1948) - 1699652..1700005 (+) 354 WP_002953536.1 DUF3397 domain-containing protein -
  H1X13_RS08715 (STHERMO_1949) - 1700097..1700594 (-) 498 WP_002947059.1 beta-class carbonic anhydrase -
  H1X13_RS08720 - 1700737..1701433 (-) 697 Protein_1683 TIGR00266 family protein -
  H1X13_RS08725 (STHERMO_1953) radA 1701522..1702883 (-) 1362 WP_080998440.1 DNA repair protein RadA Machinery gene
  H1X13_RS10535 - 1702919..1703060 (-) 142 Protein_1685 cysteine hydrolase -
  H1X13_RS08730 (STHERMO_1954) - 1703061..1703507 (-) 447 WP_002947069.1 dUTP diphosphatase -
  H1X13_RS08735 (STHERMO_1956) - 1703721..1704323 (+) 603 Protein_1687 NADPH-dependent FMN reductase -
  H1X13_RS10180 - 1704342..1705593 (+) 1252 Protein_1688 NAD(P)H-dependent oxidoreductase -
  H1X13_RS08750 - 1705711..1706501 (+) 791 Protein_1689 formate/nitrite transporter family protein -
  H1X13_RS10460 - 1706510..1707083 (+) 574 Protein_1690 MptD family putative ECF transporter S component -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49418.80 Da        Isoelectric Point: 6.6528

>NTDB_id=1131726 H1X13_RS08725 WP_080998440.1 1701522..1702883(-) (radA) [Streptococcus thermophilus isolate STH_CIRM_1049]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQEVKNARVSLTGEKSKPTKLKEVSSISYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
GIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELIQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFVGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYVPKNSLHGMKIPEGIQVIGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1131726 H1X13_RS08725 WP_080998440.1 1701522..1702883(-) (radA) [Streptococcus thermophilus isolate STH_CIRM_1049]
ATAGCTAAGAAAAAATCAACTTTTGTTTGTAGAGAATGTGGCTACAATTCACCCAAATATCTAGGGCGCTGTCCCAATTG
TTCTTCTTGGTCCTCTTTTGAGGAAGAGGTTGAGGTGCAGGAGGTTAAAAATGCCCGTGTCAGTTTGACGGGTGAAAAGT
CCAAACCTACTAAGTTAAAAGAAGTCTCTTCAATTAGTTATGCCCGCATAAAAACCGATATGGACGAGTTTAACCGTGTT
TTAGGTGGCGGTGTGGTTCCGGGGAGTTTGGTTCTTATTGGAGGAGATCCAGGAATAGGGAAATCGACCCTCCTCTTACA
GGTGTCAACACAGCTGGCTAACAAGGGAACTGTCCTCTATGTTTCTGGGGAAGAATCGGCCGAGCAAATCAAATTGCGGA
GTGAACGTTTAGGTGATATTGATAACGAATTTTATCTGTATGCTGAGACCAATATGCAAGCAGTCCGTAGTCAAGTGGAG
GGTATCAAACCCGATTTCCTCATTATTGATTCTATTCAGACCATCATGAGCCCAGAGATCTCTGGCGTTCAAGGTTCTGT
TTCCCAGGTTCGTGAAGTAACTGCCGAACTCATACAGATTGCCAAAACCAATAACATTGCCACTTTCATTGTTGGGCATG
TGACCAAGGAGGGACAGCTGGCTGGACCACGTATGTTGGAGCACATGGTGGATACTGTGCTTTATTTTGAGGGGGAACGT
CATCATACCTTCCGTATTCTGAGGGCAGTTAAAAACCGTTTTGGTTCAACCAATGAGATTGGGATTTTTGAAATGCAGTC
AGGTGGTCTGGTCGAGGTACTAAACCCTAGCCAAGTTTTCTTAGAAGAACGCCTAGACGGTGCCACAGGTTCTGCCATTG
TTGTCACAATGGAGGGGAGTCGACCTATCCTAGCTGAGGTTCAAGCTTTGGTGACACCGACCGTCTTTGGTAACGCAAAG
CGGACAACGACGGGACTGGACTTTAACCGTGTCAGCCTTATCATGGCTGTCTTAGAGAAACGTTGCGGCCTTCTTCTCCA
AAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTCAAGTTGGACGAGCCAGCTATTGACCTTGCAGTTGCCGTTGCTA
TCGCTTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCCTTCGTAGGAGAAATTGGCTTGACCGGAGAGATTCGT
CGTGTGACTCGTATTGAGCAGCGTATCAATGAAGCCGCTAAACTAGGTTTTACTAAGATTTATGTTCCTAAAAATTCGCT
TCATGGCATGAAGATTCCAGAAGGTATCCAGGTCATTGGGGTCACAACGGTAGGAGAAGTACTCAAAAAAGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(61-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.962

100

0.89
  radA Streptococcus pneumoniae D39

88.962

100

0.89
  radA Streptococcus pneumoniae R6

88.962

100

0.89
  radA Streptococcus pneumoniae TIGR4

88.962

100

0.89
  radA Streptococcus mitis NCTC 12261

88.962

100

0.89
  radA Streptococcus mitis SK321

88.962

100

0.89
  radA Bacillus subtilis subsp. subtilis str. 168

61.148

100

0.611

Multiple sequence alignment