Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   H1X13_RS07730 Genome accession   NZ_LR822034
Coordinates   1498765..1499496 (-) Length   243 a.a.
NCBI ID   WP_002947523.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1049     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1493765..1504496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X13_RS07705 (STHERMO_1719) - 1494814..1495995 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  H1X13_RS07715 (STHERMO_1720) trmB 1496231..1496872 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  H1X13_RS07720 (STHERMO_1721) ccrZ 1496882..1497673 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  H1X13_RS07725 (STHERMO_1722) pptB 1497731..1498765 (-) 1035 WP_372585738.1 ABC transporter permease Regulator
  H1X13_RS07730 (STHERMO_1723) pptA 1498765..1499496 (-) 732 WP_002947523.1 ABC transporter ATP-binding protein Regulator
  H1X13_RS07735 (STHERMO_1724) - 1499561..1499980 (+) 420 WP_002891660.1 HIT family protein -
  H1X13_RS07740 (STHERMO_1725) - 1499977..1500285 (+) 309 WP_180477129.1 hypothetical protein -
  H1X13_RS10130 (STHERMO_1726) - 1500327..1500542 (-) 216 WP_096811621.1 hypothetical protein -
  H1X13_RS10135 (STHERMO_1727) - 1500837..1501007 (-) 171 WP_011226439.1 hypothetical protein -
  H1X13_RS07750 (STHERMO_1728) - 1501077..1501712 (-) 636 WP_014727665.1 DUF4230 domain-containing protein -
  H1X13_RS10325 - 1501731..1501856 (-) 126 WP_011681534.1 hypothetical protein -
  H1X13_RS07755 (STHERMO_1729) - 1502265..1504364 (-) 2100 WP_180481085.1 ATP-dependent Clp protease ATP-binding subunit -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26760.94 Da        Isoelectric Point: 4.3974

>NTDB_id=1131721 H1X13_RS07730 WP_002947523.1 1498765..1499496(-) (pptA) [Streptococcus thermophilus isolate STH_CIRM_1049]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDPASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKANGKSILMSTHVLDSAEKMCDRFVILHHGQILAQGTIDELSQTFGDSSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1131721 H1X13_RS07730 WP_002947523.1 1498765..1499496(-) (pptA) [Streptococcus thermophilus isolate STH_CIRM_1049]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTACGCTAATATTCCCGTCCTAAAAGATGTCACTTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGGAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCCT
ATGGAGGACAGATTGCCATTGATGGGTTAACTATTCAACAAGATCCAGCTAGCTATCGTCAGAAGATTGGCTATATTCCT
GAAACGCCAAGTCTTTATGAAGAATTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGTCTTGATGTGAC
TGAGGGTATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGCTTAGATGAAAAGTTGGACTGGTTCCCGACTCAGTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCCTTTATTGTAAATCCAAGTCTTTTCATTGTTGATGAGCCCTTT
TTGGGATTGGATCCCTTGGCGATTTCTGATTTGATTGAGCTTCTGGCTGAGGAAAAAGCCAATGGCAAGTCTATTCTCAT
GTCGACTCACGTTTTGGATTCAGCTGAGAAGATGTGTGATCGCTTTGTGATTTTGCACCATGGACAGATCTTGGCACAGG
GGACGATTGATGAGCTTAGTCAGACCTTTGGTGACAGTAGTGCTAGTCTTAACGATATCTATATGCAGTTGACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

99.588

100

0.996
  pptA Streptococcus salivarius strain HSISS4

96.708

100

0.967

Multiple sequence alignment