Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   H1W90_RS09665 Genome accession   NZ_LR822033
Coordinates   1864354..1865121 (+) Length   255 a.a.
NCBI ID   WP_176243298.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1048     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1859354..1870121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W90_RS09650 (STHERMO_2155) - 1861670..1862353 (-) 684 WP_096811735.1 YoaK family protein -
  H1W90_RS09655 (STHERMO_2156) rlmH 1862369..1862848 (-) 480 WP_084829945.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  H1W90_RS09660 (STHERMO_2157) htrA 1863053..1864288 (+) 1236 WP_176243297.1 S1C family serine protease Regulator
  H1W90_RS09665 (STHERMO_2158) spo0J 1864354..1865121 (+) 768 WP_176243298.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 255 a.a.        Molecular weight: 29433.78 Da        Isoelectric Point: 9.6649

>NTDB_id=1131674 H1W90_RS09665 WP_176243298.1 1864354..1865121(+) (spo0J) [Streptococcus thermophilus isolate STH_CIRM_1048]
MSEQLKTLSISEIYPNPFQPRLKFSDEELVELSQSISENGLIQPIIVRKSDIIGYELIAGERRLRACKRLGMTEIPAVVK
EVTDQESRKQAIIENLQRSNLNPIEEAKAYRNLIDDLTYSHEELAKAMGKSRPYISNALRLLQLPREIQTSIENGSLSQG
HARALLAIEDSRKQLTIFQQVVAERWSVRTLEKKLQELPRKQKSKKDTHVKDKEKELERSLGLPITLRYHKNHSGTIQIH
FSTEEDFNRIINKLI

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1131674 H1W90_RS09665 WP_176243298.1 1864354..1865121(+) (spo0J) [Streptococcus thermophilus isolate STH_CIRM_1048]
ATGTCAGAACAACTCAAAACTTTATCTATTAGTGAAATTTACCCCAATCCTTTTCAACCTCGTCTAAAATTCTCCGATGA
AGAGTTAGTAGAACTAAGTCAATCAATATCAGAAAATGGTTTAATACAGCCAATTATTGTACGAAAATCTGACATTATTG
GTTATGAACTAATTGCTGGAGAAAGACGTTTACGAGCCTGTAAACGTTTAGGGATGACAGAAATCCCTGCAGTTGTAAAG
GAAGTTACAGATCAAGAGAGTCGTAAACAAGCTATTATTGAAAATCTACAACGATCAAATCTCAATCCTATTGAAGAAGC
AAAGGCCTATCGTAATTTAATTGATGATTTAACTTATAGTCACGAGGAGCTCGCTAAAGCTATGGGAAAATCTAGACCAT
ATATTAGTAACGCTCTTAGACTACTACAACTTCCGCGAGAGATACAAACGAGTATTGAAAACGGAAGTCTGAGTCAGGGA
CATGCTAGAGCACTCTTAGCTATTGAGGATTCTCGAAAGCAGTTAACCATCTTTCAGCAGGTTGTGGCTGAAAGATGGTC
TGTTCGTACTCTAGAAAAAAAACTTCAGGAACTTCCTAGAAAACAAAAATCTAAAAAAGATACCCATGTAAAAGATAAAG
AAAAAGAACTTGAAAGATCACTAGGTCTCCCCATAACTCTACGTTATCACAAAAATCACTCAGGAACGATTCAAATACAC
TTTTCGACAGAAGAAGATTTTAACAGAATTATCAACAAGCTTATCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

56.863

100

0.569


Multiple sequence alignment