Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   H1W91_RS02280 Genome accession   NZ_LR822032
Coordinates   416045..416488 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1050     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 411045..421488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W91_RS02260 (STHERMO_0459) - 411566..412318 (-) 753 WP_180476800.1 NUDIX domain-containing protein -
  H1W91_RS02265 (STHERMO_0460) - 412382..413488 (-) 1107 WP_180476802.1 AAA family ATPase -
  H1W91_RS02270 (STHERMO_0461) gdhA 413832..415184 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  H1W91_RS02275 (STHERMO_0462) - 415444..415854 (+) 411 WP_011680804.1 peptide deformylase -
  H1W91_RS02280 (STHERMO_0463) rcrR 416045..416488 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  H1W91_RS02285 (STHERMO_0464) rcrP 416492..418306 (+) 1815 WP_180476804.1 ABC transporter ATP-binding protein Regulator
  H1W91_RS02290 (STHERMO_0465) rcrQ 418296..420074 (+) 1779 WP_180476806.1 ABC transporter ATP-binding protein Regulator
  H1W91_RS02295 (STHERMO_0466) - 420230..420601 (+) 372 WP_232087047.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=1131570 H1W91_RS02280 WP_002945408.1 416045..416488(+) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_1050]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=1131570 H1W91_RS02280 WP_002945408.1 416045..416488(+) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_1050]
ATGCATGGGAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGATAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment