Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ER2796_RS17170 Genome accession   NZ_CP009644
Coordinates   3434490..3435167 (+) Length   225 a.a.
NCBI ID   WP_000178154.1    Uniprot ID   P25960
Organism   Escherichia coli ER2796 strain K-12 ER2796     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3429490..3440167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ER2796_RS17135 (ER2796_3414) gspG 3429970..3430407 (+) 438 WP_001202874.1 type II secretion system major pseudopilin GspG -
  ER2796_RS17140 (ER2796_3415) gspH 3430415..3430924 (+) 510 WP_001076046.1 type II secretion system minor pseudopilin GspH -
  ER2796_RS17145 (ER2796_3416) gspI 3430921..3431298 (+) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  ER2796_RS17150 (ER2796_3417) gspJ 3431291..3431878 (+) 588 WP_000610634.1 type II secretion system minor pseudopilin GspJ -
  ER2796_RS17155 (ER2796_3418) gspK 3431871..3432854 (+) 984 WP_001058522.1 type II secretion system minor pseudopilin GspK -
  ER2796_RS17160 (ER2796_3419) gspL 3432869..3434032 (+) 1164 WP_001115238.1 type II secretion system protein GspL -
  ER2796_RS17165 (ER2796_3420) gspM 3434029..3434490 (+) 462 WP_001295161.1 type II secretion system protein GspM -
  ER2796_RS17170 (ER2796_3421) pilD 3434490..3435167 (+) 678 WP_000178154.1 prepilin peptidase GspO Machinery gene
  ER2796_RS17175 (ER2796_3422) bfr 3435196..3435672 (-) 477 WP_000675504.1 bacterioferritin -
  ER2796_RS17180 (ER2796_3423) bfd 3435744..3435938 (-) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  ER2796_RS17185 (ER2796_3424) chiA 3436107..3438800 (-) 2694 WP_000773156.1 bifunctional chitinase/lysozyme -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24956.82 Da        Isoelectric Point: 7.6353

>NTDB_id=113153 ER2796_RS17170 WP_000178154.1 3434490..3435167(+) (pilD) [Escherichia coli ER2796 strain K-12 ER2796]
MTMLLPLFILVGFIADYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=113153 ER2796_RS17170 WP_000178154.1 3434490..3435167(+) (pilD) [Escherichia coli ER2796 strain K-12 ER2796]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGATTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P25960

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378

Multiple sequence alignment