Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   H1W74_RS02195 Genome accession   NZ_LR822031
Coordinates   408683..409126 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1047     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 403683..414126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W74_RS02175 (STHERMO_0465) - 404206..404960 (-) 755 Protein_381 NUDIX domain-containing protein -
  H1W74_RS02180 - 405024..406129 (-) 1106 Protein_382 AAA family ATPase -
  H1W74_RS02185 (STHERMO_0469) gdhA 406473..407825 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  H1W74_RS02190 (STHERMO_0470) - 408083..408493 (+) 411 WP_011680804.1 peptide deformylase -
  H1W74_RS02195 (STHERMO_0471) rcrR 408683..409126 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  H1W74_RS02200 (STHERMO_0472) rcrP 409130..410944 (+) 1815 WP_022096861.1 ABC transporter ATP-binding protein Regulator
  H1W74_RS02205 (STHERMO_0473) rcrQ 410934..412712 (+) 1779 WP_022096860.1 ABC transporter ATP-binding protein Regulator
  H1W74_RS02210 (STHERMO_0474) - 412868..413239 (+) 372 WP_002945426.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=1131513 H1W74_RS02195 WP_002945408.1 408683..409126(+) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_1047]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=1131513 H1W74_RS02195 WP_002945408.1 408683..409126(+) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_1047]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment