Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   H1W95_RS03605 Genome accession   NZ_LR822030
Coordinates   688476..688769 (+) Length   97 a.a.
NCBI ID   WP_014621407.1    Uniprot ID   A0AAU9H9S0
Organism   Streptococcus thermophilus isolate STH_CIRM_1046     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 683476..693769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W95_RS03585 (STHERMO_0767) - 683804..684799 (+) 996 WP_046206426.1 SIR2 family protein -
  H1W95_RS03590 (STHERMO_0768) - 684805..686661 (+) 1857 WP_116920185.1 ATP-binding protein -
  H1W95_RS03595 (STHERMO_0769) - 686800..687954 (+) 1155 WP_232087041.1 restriction endonuclease subunit S -
  H1W95_RS03600 (STHERMO_0770) - 688168..688486 (+) 319 Protein_661 type II toxin-antitoxin system RelE/ParE family toxin -
  H1W95_RS03605 (STHERMO_0771) HI0659 688476..688769 (+) 294 WP_014621407.1 helix-turn-helix domain-containing protein Machinery gene
  H1W95_RS03610 (STHERMO_0772) - 688791..690392 (+) 1602 WP_180483552.1 type I restriction-modification system subunit M -
  H1W95_RS10100 - 690500..690889 (+) 390 Protein_664 PD-(D/E)XK nuclease family transposase -
  H1W95_RS03620 (STHERMO_0774) - 690987..691988 (+) 1002 WP_014608166.1 DNA/RNA non-specific endonuclease -
  H1W95_RS03625 (STHERMO_0775) - 692138..692698 (+) 561 WP_011225762.1 LemA family protein -
  H1W95_RS03630 (STHERMO_0776) htpX 692700..693599 (+) 900 WP_014608167.1 zinc metalloprotease HtpX -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10744.50 Da        Isoelectric Point: 5.8962

>NTDB_id=1131461 H1W95_RS03605 WP_014621407.1 688476..688769(+) (HI0659) [Streptococcus thermophilus isolate STH_CIRM_1046]
MKNSAIGSNWKDVRAELFTKEEILESDLRVAIMTELIEARHEKGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQEKI

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1131461 H1W95_RS03605 WP_014621407.1 688476..688769(+) (HI0659) [Streptococcus thermophilus isolate STH_CIRM_1046]
ATGAAGAATAGTGCCATCGGCAGCAATTGGAAAGATGTGAGAGCAGAGCTCTTCACCAAGGAAGAAATCCTGGAAAGTGA
TTTACGGGTCGCGATTATGACTGAGCTGATCGAGGCTCGACACGAAAAGGGCATTAGCCAAAAGAAACTAGAAGAACTCA
GTGGGGTCAGTCAACCGGTCATCGCTCGGATGGAGACAGGAAAGACCAGTCCTCAATTGGACACGGTTTTGAAAGTCTTA
GCCAGTCTGGGCAAGACCCTCGCTGTCGTCCCACTGGAACAAGAAAAGATCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

60.44

93.814

0.567

Multiple sequence alignment