Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   H1X63_RS09480 Genome accession   NZ_LR822027
Coordinates   1838810..1839520 (+) Length   236 a.a.
NCBI ID   WP_179972362.1    Uniprot ID   A0A7U7C3L6
Organism   Streptococcus thermophilus isolate STH_CIRM_998     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1833810..1844520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X63_RS09450 (STHERMO_2074) - 1834546..1836441 (-) 1896 WP_100284924.1 M13 family metallopeptidase -
  H1X63_RS10880 - 1836523..1837675 (-) 1153 Protein_1799 alpha-amylase family glycosyl hydrolase -
  H1X63_RS11300 - 1837742..1838058 (-) 317 Protein_1800 PTS sugar transporter subunit IIA -
  H1X63_RS11305 (STHERMO_2079) - 1838112..1838477 (-) 366 WP_100284921.1 PTS trehalose transporter subunit IIBC -
  H1X63_RS09480 (STHERMO_2082) treR 1838810..1839520 (+) 711 WP_179972362.1 trehalose operon repressor Regulator
  H1X63_RS09485 (STHERMO_2083) - 1839576..1840136 (-) 561 WP_084826182.1 TIGR01440 family protein -
  H1X63_RS10890 (STHERMO_2084) - 1840149..1840487 (-) 339 WP_023909997.1 hypothetical protein -
  H1X63_RS09490 (STHERMO_2085) - 1840520..1840870 (-) 351 WP_179973039.1 hypothetical protein -
  H1X63_RS09495 (STHERMO_2087) - 1840919..1842063 (+) 1145 WP_179970608.1 IS3 family transposase -
  H1X63_RS10895 (STHERMO_2088) - 1842386..1842670 (+) 285 WP_232086861.1 hypothetical protein -
  H1X63_RS10900 (STHERMO_2089) - 1842738..1843073 (+) 336 WP_232086229.1 IS30 family transposase -
  H1X63_RS09505 (STHERMO_2090) - 1843499..1843954 (-) 456 Protein_1809 hypothetical protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27409.37 Da        Isoelectric Point: 6.9613

>NTDB_id=1131374 H1X63_RS09480 WP_179972362.1 1838810..1839520(+) (treR) [Streptococcus thermophilus isolate STH_CIRM_998]
MKKYQIVYKDLEKAIHCQKYQVGDFLLTEQELVETFKVSRDTIRKALSLLVEEGLVKKIHGVGSQVISQEQVNFPVSDLT
SYQELIEQQGLKSQTNIISLDKIIVDIILSEKTGFSRSQQVWCLIRQRIVDGCASVVDIDYLDVRLMPQLNRSIAENSIY
DYLENQLHLSISHAFKEITIDNTSEQDKTLIDIGKDHHVVCIRSKVYLNNGNQFQFTESRHKLETFKFVYYAKRHH

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1131374 H1X63_RS09480 WP_179972362.1 1838810..1839520(+) (treR) [Streptococcus thermophilus isolate STH_CIRM_998]
ATGAAAAAATATCAGATTGTTTATAAAGATTTAGAAAAAGCTATCCACTGTCAAAAGTATCAAGTTGGTGACTTCCTGCT
AACCGAGCAAGAATTAGTAGAAACTTTCAAAGTCAGTCGAGATACCATACGAAAGGCATTGTCTTTACTCGTTGAAGAAG
GTCTGGTTAAAAAGATTCATGGGGTAGGTTCTCAAGTTATTAGTCAAGAACAAGTGAACTTCCCTGTATCTGACTTAACC
AGTTACCAAGAACTCATAGAACAACAAGGCCTTAAATCACAAACTAACATTATCTCTCTAGACAAAATCATCGTTGACAT
CATTCTCTCAGAGAAAACGGGATTTTCAAGAAGCCAACAGGTTTGGTGTCTTATTCGGCAAAGGATAGTTGATGGCTGTG
CCTCTGTTGTTGATATTGATTACCTTGATGTGAGACTTATGCCTCAACTCAACCGCAGCATCGCTGAGAACTCCATCTAT
GATTATCTTGAAAATCAGCTCCACCTTAGCATTTCTCATGCCTTTAAAGAAATCACCATTGACAACACTAGCGAGCAAGA
CAAAACCCTCATCGATATCGGTAAAGATCATCACGTCGTCTGCATACGCTCAAAAGTTTATCTGAATAATGGAAATCAGT
TCCAGTTCACTGAAAGTCGACATAAACTTGAAACGTTCAAATTTGTCTATTATGCCAAGCGTCATCACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(88-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7C3L6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

55.745

99.576

0.555

Multiple sequence alignment