Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   H1X63_RS03960 Genome accession   NZ_LR822027
Coordinates   748762..749055 (+) Length   97 a.a.
NCBI ID   WP_084830565.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_998     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 743762..754055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X63_RS03940 (STHERMO_0817) - 744929..746071 (+) 1143 WP_180487810.1 AbiH family protein -
  H1X63_RS03945 (STHERMO_0818) - 746238..746957 (+) 720 WP_179972855.1 hypothetical protein -
  H1X63_RS03950 (STHERMO_0819) - 747009..748241 (+) 1233 WP_179972990.1 restriction endonuclease subunit S -
  H1X63_RS03955 (STHERMO_0820) - 748455..748772 (+) 318 WP_232086177.1 type II toxin-antitoxin system RelE/ParE family toxin -
  H1X63_RS03960 (STHERMO_0821) HI0659 748762..749055 (+) 294 WP_084830565.1 helix-turn-helix domain-containing protein Machinery gene
  H1X63_RS03965 (STHERMO_0822) - 749076..750677 (+) 1602 WP_084830566.1 type I restriction-modification system subunit M -
  H1X63_RS10580 - 750794..751184 (+) 391 Protein_733 PD-(D/E)XK nuclease family transposase -
  H1X63_RS11000 - 751248..752261 (+) 1014 Protein_734 DNA/RNA non-specific endonuclease -
  H1X63_RS03980 (STHERMO_0828) - 752412..752972 (+) 561 WP_084831058.1 LemA family protein -
  H1X63_RS03985 (STHERMO_0829) htpX 752974..753873 (+) 900 WP_095559312.1 zinc metalloprotease HtpX -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10686.43 Da        Isoelectric Point: 7.0172

>NTDB_id=1131340 H1X63_RS03960 WP_084830565.1 748762..749055(+) (HI0659) [Streptococcus thermophilus isolate STH_CIRM_998]
MKNSAIGSNWKDVRAELFTKEEILESDLRVAIMTELIEARHEKGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGRTLAVVPLEQGKV

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1131340 H1X63_RS03960 WP_084830565.1 748762..749055(+) (HI0659) [Streptococcus thermophilus isolate STH_CIRM_998]
ATGAAGAATAGTGCCATCGGCAGCAATTGGAAAGATGTGAGAGCAGAGCTCTTCACCAAGGAAGAAATCCTGGAAAGTGA
TTTGCGGGTCGCGATTATGACTGAGCTAATCGAAGCTCGGCATGAAAAGGGCATTAGCCAAAAGAAACTAGAAGAACTCA
GTGGGGTCAGTCAACCGGTCATCGCTCGAATGGAGACAGGAAAGACCAGTCCTCAATTGGATACGGTCTTGAAAGTCTTA
GCCAGTCTGGGTAGGACCCTCGCTGTCGTCCCACTGGAACAAGGAAAGGTCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

59.341

93.814

0.557

Multiple sequence alignment