Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   H1W98_RS10440 Genome accession   NZ_LR822026
Coordinates   2016524..2017291 (+) Length   255 a.a.
NCBI ID   WP_084826210.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_967     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2011524..2022291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W98_RS10425 (STHERMO_2384) - 2013840..2014523 (-) 684 WP_179972452.1 YoaK family protein -
  H1W98_RS10430 (STHERMO_2385) rlmH 2014539..2015018 (-) 480 WP_084826208.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  H1W98_RS10435 (STHERMO_2386) htrA 2015223..2016458 (+) 1236 WP_180482326.1 S1C family serine protease Regulator
  H1W98_RS10440 (STHERMO_2387) spo0J 2016524..2017291 (+) 768 WP_084826210.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29545.87 Da        Isoelectric Point: 9.6763

>NTDB_id=1131313 H1W98_RS10440 WP_084826210.1 2016524..2017291(+) (spo0J) [Streptococcus thermophilus isolate STH_CIRM_967]
MSEQLRTLSINEIYPNPFQPRLKFSDEELVELSQSISENGLIQPIIVRKSDIIGYELIAGERRLRACKRLGMTEIPAVVK
EVTDQESRKQAIIENLQRSNLNPIEEAKAYRNLIDELNYSHEELAKAMGKSRPYISNTLRLLQLPREIQTSIENGSLSQG
HARALLAIEDSRKQLTIFQQVVAERWSVRTLEKKLQELPRKQKSKKDTHVKDKEKELERSLGLPITLRYHKNHSGTIQIH
FSTEEDFNRIINKLI

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1131313 H1W98_RS10440 WP_084826210.1 2016524..2017291(+) (spo0J) [Streptococcus thermophilus isolate STH_CIRM_967]
ATGTCAGAACAACTCAGAACTTTATCTATTAATGAAATTTACCCCAATCCTTTTCAACCTCGTCTAAAATTCTCCGATGA
AGAGTTAGTAGAACTAAGTCAGTCAATATCAGAAAATGGTTTAATACAACCAATTATTGTACGAAAATCTGACATTATTG
GTTATGAACTAATTGCTGGAGAAAGACGTTTACGAGCCTGTAAACGTTTAGGGATGACAGAAATTCCTGCAGTTGTAAAG
GAAGTTACAGATCAAGAGAGTCGTAAACAAGCTATTATTGAAAATCTACAACGATCAAATCTCAATCCTATTGAAGAAGC
AAAGGCCTATCGTAATTTAATTGATGAGTTAAATTATAGTCACGAGGAGCTCGCTAAAGCTATGGGGAAATCTAGACCAT
ATATTAGTAACACTCTTAGACTACTACAACTTCCGCGAGAGATACAAACGAGTATTGAAAACGGAAGTCTGAGTCAGGGA
CATGCTAGAGCACTCTTAGCTATTGAGGATTCTCGAAAGCAGTTAACCATCTTTCAGCAGGTTGTGGCTGAAAGATGGTC
TGTTCGTACTCTAGAAAAAAAACTTCAGGAACTTCCTAGAAAACAAAAATCTAAAAAAGATACCCATGTAAAAGATAAAG
AAAAAGAACTTGAAAGATCACTAGGTCTCCCTATAACTCTACGTTATCACAAAAATCACTCAGGAACGATTCAAATACAC
TTTTCGACAGAAGAAGATTTTAACAGAATTATCAACAAGCTTATCTAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(8-95)

HTH domain found in ParB protein (HTH_ParB)

(147-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

56.471

100

0.565

Multiple sequence alignment