Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   H1W98_RS08250 Genome accession   NZ_LR822026
Coordinates   1600681..1601412 (-) Length   243 a.a.
NCBI ID   WP_180482418.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_967     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1595681..1606412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W98_RS08225 (STHERMO_1863) - 1596745..1597926 (+) 1182 WP_179972194.1 NAD(P)/FAD-dependent oxidoreductase -
  H1W98_RS08235 (STHERMO_1864) trmB 1598147..1598788 (-) 642 WP_046206494.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  H1W98_RS08240 (STHERMO_1865) ccrZ 1598798..1599589 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  H1W98_RS08245 (STHERMO_1866) pptB 1599647..1600681 (-) 1035 WP_415669296.1 ABC transporter permease Regulator
  H1W98_RS08250 (STHERMO_1867) pptA 1600681..1601412 (-) 732 WP_180482418.1 ABC transporter ATP-binding protein Regulator
  H1W98_RS08255 (STHERMO_1868) - 1601477..1601896 (+) 420 WP_179972198.1 HIT family protein -
  H1W98_RS08260 (STHERMO_1869) - 1601893..1602192 (+) 300 WP_180482417.1 hypothetical protein -
  H1W98_RS08265 (STHERMO_1870) - 1602244..1602972 (-) 729 WP_180482416.1 hypothetical protein -
  H1W98_RS08270 (STHERMO_1871) - 1602991..1603626 (-) 636 WP_014727665.1 DUF4230 domain-containing protein -
  H1W98_RS11140 - 1603645..1603770 (-) 126 WP_260215148.1 hypothetical protein -
  H1W98_RS10490 (STHERMO_1872) - 1604263..1605512 (+) 1250 Protein_1581 ISL3 family transposase -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26883.15 Da        Isoelectric Point: 4.5146

>NTDB_id=1131297 H1W98_RS08250 WP_180482418.1 1600681..1601412(-) (pptA) [Streptococcus thermophilus isolate STH_CIRM_967]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGLIAIDGLTIQQDPASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKANGKSILMSTHVLDSAEKMCDRFVILHHGQVLAQGTIDEFRQTFGYSSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1131297 H1W98_RS08250 WP_180482418.1 1600681..1601412(-) (pptA) [Streptococcus thermophilus isolate STH_CIRM_967]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTATGCCAATATTCCCGTCCTAAAAGATGTCACTTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGGAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCCT
ATGGAGGACTGATTGCCATTGATGGGTTAACTATTCAACAAGATCCAGCTAGCTATCGTCAGAAGATTGGCTATATTCCT
GAGACGCCAAGTCTTTATGAAGAATTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGTCTTGATGTGAC
TGAGGGTATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGCTTAGATGAAAAGTTGGACTGGTTCCCGACTCAGTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGCGCCTTTATTGTCAACCCAAGTCTTTTCATTGTTGATGAGCCCTTT
TTGGGATTGGATCCCTTGGCGATTTCTGATTTGATTGAGCTTCTGGCTGAGGAAAAAGCCAATGGCAAGTCTATTCTCAT
GTCGACTCACGTTTTGGATTCAGCCGAGAAGATGTGTGATCGCTTTGTGATTTTGCACCATGGACAGGTCTTGGCACAGG
GGACGATTGATGAGTTTCGTCAGACCTTTGGCTACAGTAGTGCTAGTCTTAACGATATCTATATGCAGTTGACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

98.354

100

0.984
  pptA Streptococcus salivarius strain HSISS4

96.296

100

0.963

Multiple sequence alignment