Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   H0513_RS01245 Genome accession   NZ_LR822023
Coordinates   216626..217564 (+) Length   312 a.a.
NCBI ID   WP_100262323.1    Uniprot ID   A0A7U7C712
Organism   Streptococcus thermophilus isolate STH_CIRM_368     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 211626..222564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0513_RS01225 (STHERMO_0232) - 211836..213483 (+) 1648 Protein_189 peptide ABC transporter substrate-binding protein -
  H0513_RS01230 (STHERMO_0233) - 213614..214528 (+) 915 WP_179972557.1 ABC transporter permease -
  H0513_RS01235 (STHERMO_0234) - 214539..215570 (+) 1032 WP_258380588.1 ABC transporter permease -
  H0513_RS01240 (STHERMO_0235) oppD 215587..216624 (+) 1038 WP_232086215.1 ABC transporter ATP-binding protein Regulator
  H0513_RS01245 (STHERMO_0236) amiF 216626..217564 (+) 939 WP_100262323.1 ABC transporter ATP-binding protein Regulator
  H0513_RS10750 (STHERMO_0237) - 217678..217839 (+) 162 WP_232086214.1 hypothetical protein -
  H0513_RS01255 (STHERMO_0238) hslO 218114..218980 (+) 867 WP_100262322.1 Hsp33 family molecular chaperone HslO -
  H0513_RS01260 (STHERMO_0239) dusB 218973..219950 (+) 978 WP_179972558.1 tRNA dihydrouridine synthase DusB -
  H0513_RS01265 (STHERMO_0240) - 220153..221016 (+) 864 WP_011226821.1 Rgg/GadR/MutR family transcriptional regulator -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35152.85 Da        Isoelectric Point: 6.5705

>NTDB_id=1131129 H0513_RS01245 WP_100262323.1 216626..217564(+) (amiF) [Streptococcus thermophilus isolate STH_CIRM_368]
MTQERKKLVELKNVSLTFNKGKSNEVKAIDDVSFAIYEGEIFGLVGESGSGKTTIGRSVLKLSDIDSGTVTFSGNEISSL
KGKDLHDFRKTAQMIFQDPQASLNGRMKIRDIIAEGIDIHKLAKSKEEREAKVKELIDLVGLNEDHLSRYPHEFSGGQRQ
RIGIARALAVNPHFIVADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGPADE
IYHNPIHPYTKSLLSAIPEPDPERERKRQHLIYDSSIENDGENRHMYEIRSGHFVYATEAEAKNYKEEAKSN

Nucleotide


Download         Length: 939 bp        

>NTDB_id=1131129 H0513_RS01245 WP_100262323.1 216626..217564(+) (amiF) [Streptococcus thermophilus isolate STH_CIRM_368]
ATGACACAAGAACGTAAAAAGTTAGTAGAATTAAAAAATGTGTCTCTAACTTTTAATAAAGGAAAATCAAACGAGGTTAA
GGCTATTGATGACGTTAGCTTTGCTATCTATGAGGGCGAAATTTTTGGACTAGTTGGAGAATCTGGATCAGGTAAAACAA
CCATTGGGCGATCTGTTCTAAAACTTTCTGATATTGATTCGGGTACTGTTACCTTTTCAGGTAATGAGATATCAAGTTTA
AAAGGGAAAGATCTTCATGATTTCCGTAAGACAGCTCAGATGATCTTTCAAGATCCTCAAGCTAGTCTTAATGGACGCAT
GAAAATCCGTGATATTATTGCTGAAGGCATTGATATTCATAAATTGGCTAAATCTAAGGAAGAGCGTGAAGCTAAGGTTA
AAGAACTCATTGATTTGGTAGGGTTAAATGAAGATCACCTATCAAGATATCCTCATGAGTTTTCTGGTGGTCAACGTCAA
AGGATTGGTATTGCGCGTGCTTTAGCGGTTAATCCTCATTTTATTGTAGCAGACGAACCGATTTCTGCTTTGGATGTTTC
TATCCAAGCACAGGTGGTTAATTTGATGCAGAAGTTGCAACATGAACAGGGGTTAACTTATTTGTTTATTGCCCATGACC
TATCGATGGTTAAATATATATCCGATCGTATTGGTGTAATGCATTGGGGTAAACTTCTTGAAGTAGGACCAGCAGATGAG
ATCTATCATAACCCGATTCATCCTTATACAAAGAGTCTATTATCTGCAATTCCAGAACCAGATCCAGAAAGAGAGCGTAA
GCGTCAGCATTTGATTTACGATTCCTCTATTGAAAATGATGGAGAAAATAGACACATGTATGAAATCCGATCAGGACATT
TTGTTTATGCTACAGAAGCAGAGGCTAAAAATTATAAAGAAGAAGCCAAGTCTAATTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7C712

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

53.77

97.756

0.526
  amiF Streptococcus thermophilus LMG 18311

53.443

97.756

0.522
  amiF Streptococcus salivarius strain HSISS4

53.115

97.756

0.519

Multiple sequence alignment