Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   H0514_RS06220 Genome accession   NZ_LR822020
Coordinates   1210681..1210974 (-) Length   97 a.a.
NCBI ID   WP_084830565.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_956     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1205681..1215974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0514_RS06195 (STHERMO_1422) htpX 1205864..1206763 (-) 900 WP_095559312.1 zinc metalloprotease HtpX -
  H0514_RS06200 (STHERMO_1423) - 1206765..1207325 (-) 561 WP_084831058.1 LemA family protein -
  H0514_RS10750 (STHERMO_1424) - 1207476..1208488 (-) 1013 Protein_1175 DNA/RNA non-specific endonuclease -
  H0514_RS10760 - 1208552..1208942 (-) 391 Protein_1176 PD-(D/E)XK nuclease family transposase -
  H0514_RS06215 (STHERMO_1428) - 1209059..1210660 (-) 1602 WP_084830566.1 type I restriction-modification system subunit M -
  H0514_RS06220 (STHERMO_1429) HI0659 1210681..1210974 (-) 294 WP_084830565.1 helix-turn-helix domain-containing protein Machinery gene
  H0514_RS06225 (STHERMO_1430) - 1210964..1211281 (-) 318 WP_232086177.1 type II toxin-antitoxin system RelE/ParE family toxin -
  H0514_RS06230 (STHERMO_1431) - 1211495..1212772 (-) 1278 WP_232086178.1 restriction endonuclease subunit S -
  H0514_RS06235 (STHERMO_1432) - 1212779..1213498 (-) 720 WP_179972855.1 hypothetical protein -
  H0514_RS06240 (STHERMO_1433) - 1213665..1214807 (-) 1143 WP_179972989.1 AbiH family protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10686.43 Da        Isoelectric Point: 7.0172

>NTDB_id=1131097 H0514_RS06220 WP_084830565.1 1210681..1210974(-) (HI0659) [Streptococcus thermophilus isolate STH_CIRM_956]
MKNSAIGSNWKDVRAELFTKEEILESDLRVAIMTELIEARHEKGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGRTLAVVPLEQGKV

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1131097 H0514_RS06220 WP_084830565.1 1210681..1210974(-) (HI0659) [Streptococcus thermophilus isolate STH_CIRM_956]
ATGAAGAATAGTGCCATCGGCAGCAATTGGAAAGATGTGAGAGCAGAGCTCTTCACCAAGGAAGAAATCCTGGAAAGTGA
TTTGCGGGTCGCGATTATGACTGAGCTAATCGAAGCTCGGCATGAAAAGGGCATTAGCCAAAAGAAACTAGAAGAACTCA
GTGGGGTCAGTCAACCGGTCATCGCTCGAATGGAGACAGGAAAGACCAGTCCTCAATTGGATACGGTCTTGAAAGTCTTA
GCCAGTCTGGGTAGGACCCTCGCTGTCGTCCCACTGGAACAAGGAAAGGTCTAA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

59.341

93.814

0.557

Multiple sequence alignment