Detailed information
Bioinformatically predicted
Overview
| Name | amiD | Type | Regulator |
| Locus tag | H0514_RS03045 | Genome accession | NZ_LR822020 |
| Coordinates | 582830..583756 (+) | Length | 308 a.a. |
| NCBI ID | WP_179972090.1 | Uniprot ID | A0A8D6U7Y1 |
| Organism | Streptococcus thermophilus isolate STH_CIRM_956 | ||
| Function | internalize XIP (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 540071..582830 | 582830..583756 | flank | 0 |
Gene organization within MGE regions
Location: 540071..583756
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H0514_RS02840 (STHERMO_0636) | dnaG | 540071..541882 (+) | 1812 | WP_179973275.1 | DNA primase | - |
| H0514_RS02845 (STHERMO_0637) | rpoD | 541886..542995 (+) | 1110 | WP_179972112.1 | RNA polymerase sigma factor RpoD | - |
| H0514_RS02850 (STHERMO_0638) | - | 543049..543384 (+) | 336 | WP_179972111.1 | metal-sulfur cluster assembly factor | - |
| H0514_RS02855 (STHERMO_0639) | - | 543395..544321 (+) | 927 | WP_179972110.1 | glycosyltransferase family 2 protein | - |
| H0514_RS02860 (STHERMO_0640) | - | 544326..545633 (+) | 1308 | WP_179972109.1 | DUF2142 domain-containing protein | - |
| H0514_RS02865 (STHERMO_0641) | rfbD | 545706..546557 (+) | 852 | WP_179972108.1 | dTDP-4-dehydrorhamnose reductase | - |
| H0514_RS02870 (STHERMO_0642) | - | 546676..547929 (+) | 1254 | WP_179972107.1 | oligosaccharide flippase family protein | - |
| H0514_RS02875 (STHERMO_0643) | - | 547931..548908 (+) | 978 | WP_024010021.1 | glycosyltransferase family 2 protein | - |
| H0514_RS02880 (STHERMO_0644) | - | 548926..549894 (+) | 969 | WP_011681443.1 | glycosyltransferase family 2 protein | - |
| H0514_RS02885 (STHERMO_0645) | - | 549895..550611 (+) | 717 | WP_041827367.1 | glycosyltransferase family 2 protein | - |
| H0514_RS02890 (STHERMO_0646) | - | 550611..550967 (+) | 357 | WP_011681441.1 | DUF2304 domain-containing protein | - |
| H0514_RS02895 (STHERMO_0647) | - | 550957..551733 (+) | 777 | WP_179972106.1 | glycosyltransferase family 2 protein | - |
| H0514_RS02900 (STHERMO_0649) | - | 552195..552623 (+) | 429 | WP_179972104.1 | hypothetical protein | - |
| H0514_RS02905 (STHERMO_0650) | - | 552903..555950 (+) | 3048 | WP_179972103.1 | rhamnan synthesis F family protein | - |
| H0514_RS02910 (STHERMO_0651) | - | 555937..557244 (+) | 1308 | WP_179972102.1 | DUF2142 domain-containing protein | - |
| H0514_RS02915 (STHERMO_0652) | - | 557248..558495 (+) | 1248 | WP_071417301.1 | glycosyltransferase family 4 protein | - |
| H0514_RS02920 (STHERMO_0654) | - | 558512..560027 (+) | 1516 | Protein_533 | glucosyltransferase domain-containing protein | - |
| H0514_RS02925 (STHERMO_0656) | cps2T | 560225..561373 (+) | 1149 | WP_179973276.1 | beta 1-4 rhamnosyltransferase Cps2T | - |
| H0514_RS02930 (STHERMO_0657) | - | 561370..562308 (+) | 939 | WP_179973277.1 | glycosyltransferase family 2 protein | - |
| H0514_RS02935 (STHERMO_0658) | - | 562309..563115 (+) | 807 | WP_014608560.1 | ABC transporter permease | - |
| H0514_RS02940 (STHERMO_0659) | - | 563115..564317 (+) | 1203 | WP_179973278.1 | ABC transporter ATP-binding protein | - |
| H0514_RS02945 (STHERMO_0660) | - | 564318..565988 (+) | 1671 | WP_179973279.1 | rhamnan synthesis F family protein | - |
| H0514_RS02950 (STHERMO_0661) | radC | 566006..566692 (+) | 687 | WP_011226324.1 | RadC family protein | - |
| H0514_RS02955 (STHERMO_0662) | - | 566745..567440 (-) | 696 | WP_179973280.1 | gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | - |
| H0514_RS02960 (STHERMO_0663) | - | 567433..568092 (-) | 660 | WP_179973358.1 | redox-sensing transcriptional repressor Rex | - |
| H0514_RS02965 (STHERMO_0664) | - | 568236..568583 (-) | 348 | WP_002948028.1 | DUF1831 domain-containing protein | - |
| H0514_RS02970 (STHERMO_0665) | - | 568585..569697 (-) | 1113 | WP_002948029.1 | cysteine desulfurase family protein | - |
| H0514_RS02975 (STHERMO_0666) | - | 569701..570672 (-) | 972 | WP_011681428.1 | ribose-phosphate diphosphokinase | - |
| H0514_RS02980 (STHERMO_0668) | - | 571033..571608 (-) | 576 | WP_179972094.1 | CYTH domain-containing protein | - |
| H0514_RS02985 (STHERMO_0669) | - | 571704..572378 (+) | 675 | WP_179972093.1 | GTP pyrophosphokinase family protein | - |
| H0514_RS02990 (STHERMO_0670) | - | 572350..573186 (+) | 837 | WP_179972092.1 | NAD kinase | - |
| H0514_RS02995 (STHERMO_0671) | - | 573183..574079 (+) | 897 | WP_014727627.1 | RluA family pseudouridine synthase | - |
| H0514_RS03000 (STHERMO_0672) | pta | 574093..575076 (+) | 984 | WP_332057696.1 | phosphate acetyltransferase | - |
| H0514_RS03005 | - | 575167..576517 (+) | 1351 | Protein_550 | IS3 family transposase | - |
| H0514_RS03010 (STHERMO_0676) | - | 576577..577770 (-) | 1194 | WP_100262689.1 | OFA family MFS transporter | - |
| H0514_RS11130 (STHERMO_0677) | - | 578119..578367 (+) | 249 | Protein_552 | TatD family hydrolase | - |
| H0514_RS11135 | - | 578465..578875 (+) | 411 | Protein_553 | ATP-binding cassette domain-containing protein | - |
| H0514_RS03030 | - | 578869..579059 (+) | 191 | Protein_554 | IS3 family transposase | - |
| H0514_RS03035 (STHERMO_0680) | amiA3 | 579295..581271 (+) | 1977 | WP_179972091.1 | peptide ABC transporter substrate-binding protein | Regulator |
| H0514_RS03040 (STHERMO_0681) | amiC | 581337..582830 (+) | 1494 | WP_164135541.1 | ABC transporter permease | Regulator |
| H0514_RS03045 (STHERMO_0682) | amiD | 582830..583756 (+) | 927 | WP_179972090.1 | oligopeptide ABC transporter permease OppC | Regulator |
Sequence
Protein
Download Length: 308 a.a. Molecular weight: 34670.87 Da Isoelectric Point: 9.7054
>NTDB_id=1131082 H0514_RS03045 WP_179972090.1 582830..583756(+) (amiD) [Streptococcus thermophilus isolate STH_CIRM_956]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIVLMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATLLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPPLLVIIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIVLMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATLLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPPLLVIIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR
Nucleotide
Download Length: 927 bp
>NTDB_id=1131082 H0514_RS03045 WP_179972090.1 582830..583756(+) (amiD) [Streptococcus thermophilus isolate STH_CIRM_956]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAGTCAACAGTTGTAATGTTGGGAATCTTGATTACTATTG
TTTTGATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAACGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCCTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCCCTCTCCTTGTAATTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATTGGTATTGCCTACAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATTATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAGTCAACAGTTGTAATGTTGGGAATCTTGATTACTATTG
TTTTGATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAACGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCCTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCCCTCTCCTTGTAATTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATTGGTATTGCCTACAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATTATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| amiD | Streptococcus thermophilus LMG 18311 |
98.701 |
100 |
0.987 |
| amiD | Streptococcus thermophilus LMD-9 |
98.701 |
100 |
0.987 |
| amiD | Streptococcus salivarius strain HSISS4 |
95.455 |
100 |
0.955 |