Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H0514_RS01005 Genome accession   NZ_LR822020
Coordinates   173398..174759 (+) Length   453 a.a.
NCBI ID   WP_179973037.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_956     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 168398..179759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0514_RS00980 (STHERMO_0200) - 169268..169771 (-) 504 WP_084829126.1 MptD family putative ECF transporter S component -
  H0514_RS00985 - 169780..170571 (-) 792 Protein_151 formate/nitrite transporter family protein -
  H0514_RS00990 (STHERMO_0204) - 170689..171939 (-) 1251 WP_179972325.1 NAD(P)H-dependent oxidoreductase -
  H0514_RS00995 (STHERMO_0205) - 171958..172560 (-) 603 WP_179972324.1 NADPH-dependent FMN reductase -
  H0514_RS01000 (STHERMO_0206) - 172774..173220 (+) 447 WP_179972323.1 dUTP diphosphatase -
  H0514_RS01005 (STHERMO_0207) radA 173398..174759 (+) 1362 WP_179973037.1 DNA repair protein RadA Machinery gene
  H0514_RS01010 - 174829..175526 (+) 698 Protein_156 TIGR00266 family protein -
  H0514_RS01015 (STHERMO_0211) - 175668..176165 (+) 498 WP_084830822.1 beta-class carbonic anhydrase -
  H0514_RS01020 (STHERMO_0212) - 176244..177493 (-) 1250 Protein_158 ISL3 family transposase -
  H0514_RS01025 (STHERMO_0213) - 177678..178031 (-) 354 WP_179972322.1 DUF3397 domain-containing protein -
  H0514_RS01030 (STHERMO_0214) rplK 178203..178628 (+) 426 WP_179972321.1 50S ribosomal protein L11 -
  H0514_RS01035 (STHERMO_0215) rplA 178728..179417 (+) 690 WP_179972320.1 50S ribosomal protein L1 -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49499.91 Da        Isoelectric Point: 6.3765

>NTDB_id=1131071 H0514_RS01005 WP_179973037.1 173398..174759(+) (radA) [Streptococcus thermophilus isolate STH_CIRM_956]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQELKNARVSLTGEKSKPTKLKEVSSISYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANMGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
SIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRTVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLEFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFVGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNSLHGMKIPEGIQVIGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1131071 H0514_RS01005 WP_179973037.1 173398..174759(+) (radA) [Streptococcus thermophilus isolate STH_CIRM_956]
ATAGCTAAGAAAAAATCAACTTTTGTTTGTAGAGAATGTGGCTACAATTCACCCAAATATCTAGGGCGCTGTCCCAATTG
TTCTTCTTGGTCCTCTTTTGAGGAAGAGGTTGAGGTTCAGGAGCTTAAAAATGCCCGTGTCAGTTTGACGGGTGAAAAGT
CCAAACCTACTAAGTTAAAAGAAGTCTCTTCAATTAGTTATGCCCGCATAAAAACCGATATGGACGAGTTTAACCGTGTT
TTAGGTGGCGGTGTGGTTCCGGGGAGTTTGGTTCTTATTGGAGGAGATCCAGGAATAGGGAAATCGACCCTCCTCTTACA
GGTGTCAACACAGCTGGCTAACATGGGAACTGTCCTCTATGTTTCTGGGGAAGAATCGGCCGAGCAAATCAAATTGAGGA
GTGAACGTTTAGGTGATATTGATAACGAATTTTATCTGTATGCTGAGACCAATATGCAGGCAGTCCGTAGTCAAGTGGAG
AGTATCAAACCCGATTTTCTCATTATTGATTCTATTCAGACCATCATGAGCCCAGAGATCTCTGGCGTTCAAGGTTCTGT
TTCCCAGGTTCGTGAAGTAACTGCCGAACTCATGCAGATTGCCAAAACCAATAACATTGCCACTTTTATTGTGGGGCATG
TGACCAAGGAGGGACAGCTGGCTGGACCACGTATGTTGGAGCACATGGTGGATACTGTGCTTTATTTTGAGGGGGAACGT
CATCATACCTTCCGTATTCTGCGGACAGTTAAAAACCGTTTTGGTTCAACCAATGAGATTGGGATTTTTGAAATGCAGTC
AGGTGGTCTGGTCGAGGTACTAAACCCTAGCCAAGTTTTCTTAGAAGAACGCCTAGACGGTGCCACAGGTTCTGCCATTG
TTGTCACAATGGAGGGGAGTCGACCTATCCTAGCTGAGGTTCAAGCTTTGGTGACACCGACCGTCTTTGGTAACGCAAAG
CGGACAACGACGGGACTGGAATTTAACCGTGTCAGCCTTATCATGGCTGTCTTAGAGAAACGTTGCGGCCTTCTTCTCCA
AAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTCAAGTTGGACGAGCCAGCTATTGACCTTGCAGTTGCCGTTGCTA
TCGCTTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCCTTCGTAGGAGAAATTGGCTTGACCGGAGAGATTCGT
CGTGTGACTCGTATTGAACAGCGTATCAATGAAGCCGCTAAACTAGGTTTTACTAAGATTTATGCTCCTAAAAATTCGCT
TCATGGCATGAAGATTCCAGAAGGTATTCAGGTCATTGGGGTCACAACGGTAGGAGAAGTACTCAAAAAAGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(61-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.3

100

0.883
  radA Streptococcus pneumoniae D39

88.3

100

0.883
  radA Streptococcus pneumoniae R6

88.3

100

0.883
  radA Streptococcus pneumoniae TIGR4

88.3

100

0.883
  radA Streptococcus mitis NCTC 12261

88.3

100

0.883
  radA Streptococcus mitis SK321

88.3

100

0.883
  radA Bacillus subtilis subsp. subtilis str. 168

60.927

100

0.609

Multiple sequence alignment