Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H0510_RS08315 Genome accession   NZ_LR822019
Coordinates   1607518..1608879 (-) Length   453 a.a.
NCBI ID   WP_179967100.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_772     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1602518..1613879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0510_RS08290 (STHERMO_1841) rplA 1604263..1604952 (-) 690 WP_002946412.1 50S ribosomal protein L1 -
  H0510_RS08295 (STHERMO_1842) rplK 1605052..1605477 (-) 426 WP_002953535.1 50S ribosomal protein L11 -
  H0510_RS08300 (STHERMO_1843) - 1605649..1606002 (+) 354 WP_002953536.1 DUF3397 domain-containing protein -
  H0510_RS08305 (STHERMO_1844) - 1606094..1606591 (-) 498 WP_179966808.1 beta-class carbonic anhydrase -
  H0510_RS08310 - 1606733..1607429 (-) 697 Protein_1598 TIGR00266 family protein -
  H0510_RS08315 (STHERMO_1849) radA 1607518..1608879 (-) 1362 WP_179967100.1 DNA repair protein RadA Machinery gene
  H0510_RS08320 (STHERMO_1850) - 1609057..1609503 (-) 447 WP_002947069.1 dUTP diphosphatase -
  H0510_RS08325 - 1609717..1610312 (+) 596 Protein_1601 NADPH-dependent FMN reductase -
  H0510_RS08330 (STHERMO_1854) - 1610340..1611310 (+) 971 Protein_1602 PAS domain-containing protein -
  H0510_RS08335 - 1611428..1612218 (+) 791 Protein_1603 formate/nitrite transporter family protein -
  H0510_RS08340 (STHERMO_1857) - 1612227..1612799 (+) 573 WP_179966809.1 MptD family putative ECF transporter S component -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49388.82 Da        Isoelectric Point: 6.9527

>NTDB_id=1131045 H0510_RS08315 WP_179967100.1 1607518..1608879(-) (radA) [Streptococcus thermophilus isolate STH_CIRM_772]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFVEEVEVQEVKNARVSLTGEKSKPTKLKEVSSISYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
GIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELIQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFVGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYVPKNSLHGMKIPEGIQVIGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1131045 H0510_RS08315 WP_179967100.1 1607518..1608879(-) (radA) [Streptococcus thermophilus isolate STH_CIRM_772]
ATAGCTAAGAAAAAATCAACTTTTGTTTGTAGAGAATGTGGCTACAATTCACCCAAATATCTAGGGCGCTGTCCCAATTG
TTCTTCTTGGTCCTCTTTTGTGGAAGAGGTTGAGGTGCAGGAGGTTAAAAATGCCCGTGTCAGTTTGACGGGTGAAAAGT
CCAAACCTACTAAGTTAAAAGAAGTCTCTTCAATTAGTTATGCCCGCATAAAAACCGATATGGACGAGTTTAACCGTGTT
TTAGGTGGCGGTGTGGTTCCGGGGAGTTTGGTTCTTATTGGAGGAGATCCAGGAATAGGGAAATCGACCCTCCTCTTACA
GGTGTCAACACAGCTGGCTAACAAGGGAACTGTCCTCTATGTTTCTGGGGAAGAATCGGCCGAGCAAATCAAATTGCGGA
GTGAACGTTTAGGTGATATTGATAACGAATTTTATCTGTATGCTGAGACCAATATGCAAGCAGTCCGTAGTCAAGTGGAG
GGTATCAAACCCGATTTCCTCATTATTGATTCTATTCAGACCATCATGAGCCCAGAGATCTCTGGCGTTCAAGGTTCTGT
TTCCCAGGTTCGTGAAGTAACTGCCGAACTCATACAGATTGCCAAAACCAATAACATTGCCACTTTTATTGTTGGGCATG
TGACCAAGGAGGGACAGCTGGCTGGACCACGTATGTTGGAGCACATGGTGGATACTGTGCTTTATTTTGAGGGGGAACGT
CATCATACCTTCCGTATTCTGAGGGCAGTTAAAAACCGTTTTGGTTCAACCAATGAGATTGGTATTTTTGAAATGCAGTC
AGGTGGTCTGGTCGAGGTACTAAACCCTAGCCAAGTTTTCTTAGAAGAACGCCTAGACGGTGCCACAGGTTCTGCCATTG
TTGTCACAATGGAGGGGAGTCGACCTATCCTAGCTGAGGTTCAAGCTTTGGTGACACCGACCGTCTTTGGTAACGCAAAG
CGGACAACGACGGGACTGGACTTTAACCGTGTCAGTCTTATCATGGCTGTCTTAGAGAAACGTTGCGGCCTTCTTCTCCA
AAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTCAAGTTGGACGAGCCAGCTATTGACCTTGCAGTTGCCGTTGCTA
TCGCTTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCCTTCGTAGGAGAAATTGGCTTGACCGGAGAGATTCGT
CGTGTGACTCGTATTGAGCAGCGTATCAATGAAGCCGCTAAACTAGGTTTTACTAAGATTTATGTTCCTAAAAACTCGCT
TCATGGCATGAAGATTCCAGAAGGTATCCAGGTCATTGGGGTCACAACGGTAGGAGAAGTACTCAAAAAAGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(61-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

89.183

100

0.892
  radA Streptococcus pneumoniae D39

89.183

100

0.892
  radA Streptococcus pneumoniae R6

89.183

100

0.892
  radA Streptococcus pneumoniae TIGR4

89.183

100

0.892
  radA Streptococcus mitis NCTC 12261

89.183

100

0.892
  radA Streptococcus mitis SK321

89.183

100

0.892
  radA Bacillus subtilis subsp. subtilis str. 168

61.369

100

0.614

Multiple sequence alignment