Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   H0510_RS02225 Genome accession   NZ_LR822019
Coordinates   404750..405193 (+) Length   147 a.a.
NCBI ID   WP_084829390.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_772     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 399750..410193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0510_RS02205 (STHERMO_0458) - 400264..401025 (-) 762 WP_179966940.1 NUDIX domain-containing protein -
  H0510_RS02210 - 401089..402195 (-) 1107 Protein_378 AAA family ATPase -
  H0510_RS02215 (STHERMO_0461) gdhA 402539..403891 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  H0510_RS02220 (STHERMO_0462) - 404149..404559 (+) 411 WP_011680804.1 peptide deformylase -
  H0510_RS02225 (STHERMO_0463) rcrR 404750..405193 (+) 444 WP_084829390.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  H0510_RS02230 (STHERMO_0464) rcrP 405197..407011 (+) 1815 WP_179966941.1 ABC transporter ATP-binding protein Regulator
  H0510_RS02235 (STHERMO_0465) rcrQ 407001..408779 (+) 1779 WP_096811879.1 ABC transporter ATP-binding protein Regulator
  H0510_RS02240 (STHERMO_0466) - 408935..409306 (+) 372 WP_232085709.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17043.47 Da        Isoelectric Point: 9.5790

>NTDB_id=1131016 H0510_RS02225 WP_084829390.1 404750..405193(+) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_772]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAEIAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=1131016 H0510_RS02225 WP_084829390.1 404750..405193(+) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_772]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAATAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment