Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   H0511_RS08855 Genome accession   NZ_LR822017
Coordinates   1739810..1740520 (+) Length   236 a.a.
NCBI ID   WP_179974054.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_336     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1734810..1745520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0511_RS08835 (STHERMO_1998) - 1735519..1737414 (-) 1896 WP_179974052.1 M13 family metallopeptidase -
  H0511_RS08840 - 1737496..1738675 (-) 1180 Protein_1706 alpha-amylase family glycosyl hydrolase -
  H0511_RS10635 - 1738742..1739058 (-) 317 Protein_1707 PTS sugar transporter subunit IIA -
  H0511_RS10640 (STHERMO_2004) - 1739112..1739477 (-) 366 WP_100284921.1 PTS trehalose transporter subunit IIBC -
  H0511_RS08855 (STHERMO_2007) treR 1739810..1740520 (+) 711 WP_179974054.1 trehalose operon repressor Regulator
  H0511_RS08860 (STHERMO_2008) - 1740576..1741136 (-) 561 WP_179974055.1 TIGR01440 family protein -
  H0511_RS10250 (STHERMO_2009) - 1741149..1741487 (-) 339 WP_023909997.1 hypothetical protein -
  H0511_RS08865 (STHERMO_2010) - 1741520..1741870 (-) 351 WP_179974056.1 hypothetical protein -
  H0511_RS08870 (STHERMO_2012) - 1741919..1743063 (+) 1145 WP_179974057.1 IS3 family transposase -
  H0511_RS10255 (STHERMO_2013) - 1743386..1743736 (+) 351 WP_232086234.1 hypothetical protein -
  H0511_RS10260 (STHERMO_2014) - 1743738..1744073 (+) 336 WP_232086229.1 IS30 family transposase -
  H0511_RS08880 (STHERMO_2015) - 1744499..1744954 (-) 456 Protein_1716 hypothetical protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27413.35 Da        Isoelectric Point: 6.7630

>NTDB_id=1130996 H0511_RS08855 WP_179974054.1 1739810..1740520(+) (treR) [Streptococcus thermophilus isolate STH_CIRM_336]
MKKYQIVYKDLEKAIHCQKYQVGDFLLTEQELVETFKVSRDTIRKALSLLVEEGLVKKIHGVGSQVISQEQVNFPVSDLT
SYQELIEQQGLKSQTNIISLDKIIVDIILSEKTGFSRSQQVWYLIRQRIVDGCASVVDIDYLDVRLMPQLNCSIAENSIY
DYLENQLHLSISHAFKEITIDNTSEQDKILIDIGKDHHVVCIRSKVYLNNGNQFQFTESRHKFETFKFVNYAKRHH

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1130996 H0511_RS08855 WP_179974054.1 1739810..1740520(+) (treR) [Streptococcus thermophilus isolate STH_CIRM_336]
ATGAAAAAATATCAGATTGTTTATAAAGATTTAGAAAAAGCTATCCACTGTCAAAAGTATCAAGTTGGTGACTTCCTGCT
AACCGAGCAAGAATTAGTAGAAACTTTCAAAGTCAGTCGAGATACCATACGAAAGGCATTGTCTTTACTCGTTGAAGAAG
GTCTGGTTAAAAAGATTCATGGGGTAGGTTCTCAAGTTATTAGTCAAGAACAAGTGAACTTCCCTGTATCTGACTTAACC
AGTTACCAAGAACTCATAGAACAACAAGGCCTTAAATCACAAACTAACATTATCTCTCTAGACAAAATCATCGTTGACAT
CATTCTCTCAGAGAAAACGGGATTTTCAAGAAGCCAACAGGTTTGGTATCTTATTCGGCAAAGGATAGTTGATGGCTGTG
CCTCTGTTGTTGATATTGATTACCTTGATGTGAGACTTATGCCTCAACTCAACTGCAGCATCGCTGAGAACTCCATCTAT
GATTATCTTGAAAATCAGCTCCACCTTAGCATTTCTCATGCCTTTAAAGAAATCACCATTGACAACACTAGCGAGCAAGA
CAAAATCCTCATCGATATCGGTAAAGATCATCACGTCGTCTGCATACGCTCAAAAGTTTATCTGAATAATGGAAATCAGT
TCCAGTTCACTGAAAGCCGACATAAATTTGAAACGTTCAAATTTGTCAATTATGCCAAGCGTCATCACTGA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(88-227)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

55.085

100

0.551

Multiple sequence alignment