Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H0511_RS08545 Genome accession   NZ_LR822017
Coordinates   1681411..1682772 (-) Length   453 a.a.
NCBI ID   WP_179974546.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_336     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1676411..1687772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0511_RS08520 (STHERMO_1926) rplA 1678173..1678862 (-) 690 WP_179974035.1 50S ribosomal protein L1 -
  H0511_RS08525 (STHERMO_1927) rplK 1678962..1679387 (-) 426 WP_179974036.1 50S ribosomal protein L11 -
  H0511_RS08530 (STHERMO_1928) - 1679559..1679912 (+) 354 WP_179972322.1 DUF3397 domain-containing protein -
  H0511_RS08535 (STHERMO_1929) - 1680006..1680503 (-) 498 WP_084830822.1 beta-class carbonic anhydrase -
  H0511_RS08540 - 1680645..1681156 (-) 512 Protein_1651 AIM24 family protein -
  H0511_RS08545 (STHERMO_1932) radA 1681411..1682772 (-) 1362 WP_179974546.1 DNA repair protein RadA Machinery gene
  H0511_RS08550 (STHERMO_1933) - 1682950..1683396 (-) 447 WP_179974037.1 dUTP diphosphatase -
  H0511_RS08555 (STHERMO_1935) - 1683610..1684215 (+) 606 Protein_1654 NADPH-dependent FMN reductase -
  H0511_RS08560 (STHERMO_1936) - 1684234..1685487 (+) 1254 WP_179974038.1 NAD(P)H-dependent oxidoreductase -
  H0511_RS08565 - 1685605..1686396 (+) 792 Protein_1656 formate/nitrite transporter family protein -
  H0511_RS08570 (STHERMO_1939) - 1686405..1686908 (+) 504 WP_084829126.1 MptD family putative ECF transporter S component -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49390.79 Da        Isoelectric Point: 6.9531

>NTDB_id=1130988 H0511_RS08545 WP_179974546.1 1681411..1682772(-) (radA) [Streptococcus thermophilus isolate STH_CIRM_336]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQELKNARVSLTGEKSKPTKLKEVSSISYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMKAVRSQVE
GIKPDFLIIDSIQTIMSPEVSGVQGSVSQVREVTAELIQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFVGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNSLHGMKIPEGIQVIGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1130988 H0511_RS08545 WP_179974546.1 1681411..1682772(-) (radA) [Streptococcus thermophilus isolate STH_CIRM_336]
ATAGCTAAGAAAAAATCAACTTTTGTTTGTAGAGAATGTGGCTACAATTCACCCAAATATCTAGGGCGCTGTCCCAATTG
TTCTTCTTGGTCCTCTTTTGAGGAAGAGGTTGAGGTGCAGGAGCTTAAAAATGCCCGTGTCAGTTTGACGGGTGAAAAGT
CCAAACCTACTAAGTTAAAAGAAGTCTCTTCAATTAGTTATGCCCGCATAAAAACTGATATGGACGAGTTTAACCGTGTT
TTAGGTGGCGGTGTGGTTCCGGGGAGTTTGGTTCTTATTGGAGGAGATCCAGGAATAGGGAAATCGACCCTCCTCTTACA
GGTGTCAACACAGCTGGCTAACAAGGGAACTGTCCTCTATGTTTCTGGGGAAGAATCGGCCGAGCAAATCAAATTGCGGA
GTGAACGTTTAGGTGATATTGATAACGAATTTTATCTGTATGCTGAGACCAATATGAAAGCAGTCCGTAGTCAAGTGGAG
GGTATCAAACCCGATTTCCTCATTATTGATTCTATTCAGACCATCATGAGCCCAGAGGTCTCTGGCGTTCAAGGTTCTGT
TTCCCAGGTTCGTGAAGTAACTGCCGAACTCATACAGATTGCCAAAACCAATAACATTGCCACTTTTATTGTTGGGCATG
TGACCAAGGAGGGACAGCTGGCTGGACCACGTATGTTGGAGCACATGGTGGATACTGTGCTTTATTTTGAGGGGGAACGT
CATCATACTTTCCGTATTCTGAGGGCAGTTAAAAACCGTTTTGGTTCAACCAATGAGATTGGGATTTTTGAAATGCAGTC
AGGTGGTCTGGTCGAGGTACTAAACCCTAGCCAAGTTTTCTTAGAAGAACGCCTAGACGGTGCCACAGGTTCTGCCATTG
TTGTCACAATGGAGGGGAGTCGACCTATCCTAGCTGAGGTTCAAGCTTTGGTGACACCGACCGTCTTTGGTAACGCAAAG
CGGACAACGACGGGACTGGACTTTAACCGTGTCAGCCTTATCATGGCTGTCTTAGAGAAACGTTGCGGCCTTCTTCTCCA
AAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTCAAGTTGGACGAGCCAGCTATTGACCTTGCAGTTGCCGTTGCTA
TCGCTTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCCTTCGTAGGAGAAATTGGCTTGACCGGAGAGATTCGT
CGTGTGACTCGTATTGAACAGCGTATCAATGAAGCCGCTAAACTAGGTTTTACTAAGATTTATGCTCCTAAAAATTCGCT
TCATGGCATGAAGATTCCAGAAGGTATTCAGGTCATTGGGGTCACAACGGTAGGAGAAGTACTCAAAAAAGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(61-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.079

100

0.881
  radA Streptococcus pneumoniae D39

88.079

100

0.881
  radA Streptococcus pneumoniae R6

88.079

100

0.881
  radA Streptococcus pneumoniae TIGR4

88.079

100

0.881
  radA Streptococcus mitis NCTC 12261

88.079

100

0.881
  radA Streptococcus mitis SK321

88.079

100

0.881
  radA Bacillus subtilis subsp. subtilis str. 168

60.927

100

0.609

Multiple sequence alignment