Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   H0508_RS05235 Genome accession   NZ_LR822014
Coordinates   1002237..1003049 (-) Length   270 a.a.
NCBI ID   WP_011681204.1    Uniprot ID   A0AAP2RND8
Organism   Streptococcus thermophilus isolate STH_CIRM_36     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 997237..1008049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0508_RS05210 (STHERMO_1155) - 998173..998559 (-) 387 WP_002953113.1 DUF1934 domain-containing protein -
  H0508_RS05215 - 998651..999531 (-) 881 Protein_977 GNAT family N-acetyltransferase -
  H0508_RS05220 (STHERMO_1159) yidA 999739..1000548 (+) 810 WP_011226081.1 sugar-phosphatase -
  H0508_RS05225 (STHERMO_1160) - 1000550..1001764 (+) 1215 WP_011227270.1 aminoacyltransferase -
  H0508_RS05230 - 1001816..1002177 (-) 362 Protein_980 YbaN family protein -
  H0508_RS05235 (STHERMO_1161) vicX 1002237..1003049 (-) 813 WP_011681204.1 MBL fold metallo-hydrolase Regulator
  H0508_RS05240 (STHERMO_1162) vicK 1003055..1004395 (-) 1341 WP_011226083.1 cell wall metabolism sensor histidine kinase VicK Regulator
  H0508_RS05245 (STHERMO_1163) vicR 1004388..1005095 (-) 708 WP_011227274.1 response regulator YycF Regulator
  H0508_RS05250 (STHERMO_1165) - 1005627..1006394 (+) 768 WP_011227275.1 amino acid ABC transporter ATP-binding protein -
  H0508_RS05255 (STHERMO_1166) - 1006406..1007239 (+) 834 WP_011227276.1 transporter substrate-binding domain-containing protein -
  H0508_RS05260 (STHERMO_1167) - 1007257..1007955 (+) 699 WP_011226087.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30045.01 Da        Isoelectric Point: 5.5779

>NTDB_id=1130850 H0508_RS05235 WP_011681204.1 1002237..1003049(-) (vicX) [Streptococcus thermophilus isolate STH_CIRM_36]
MTSELGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGM
DIYANEKTWQIMDSKNMLGKVDNSQKHIFSRGKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMA
GLIENADGYLIESNHDIEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAYMTME
NQLARADFGVGTDFKIFGTSPDTATPLTDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=1130850 H0508_RS05235 WP_011681204.1 1002237..1003049(-) (vicX) [Streptococcus thermophilus isolate STH_CIRM_36]
ATGACCTCAGAATTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACCGGGAATTCCTTTTATTTGGAAACTCCAGA
AAAGAAGATTCTAGTGGATGCTGGTTTATCAGGAAAAAAAATTACAAGTTTGCTAGCGGAGATTGACCGTGATCCAAGTG
ATCTTGATGCTATCTTAGTAACACATGAACACAAGGACCATATCCATGGTGTAGGTGTTTTAGCTCGTAAATACGGCATG
GATATATACGCCAATGAGAAAACCTGGCAAATTATGGATAGTAAGAATATGCTAGGTAAGGTTGATAATAGTCAGAAACA
TATTTTTTCTCGCGGTAAGCTTCTAACCTTTGGTGATATCGACATTGAATCTTTCGGAGTTAGTCATGATGCCATTGATC
CACAATTTTACCGCTTTATGAAAGACGGAAAGAGCTTTGTCATGTTGACGGATACAGGCTATGTTTCAGACCGTATGGCT
GGTCTTATTGAAAATGCTGATGGCTATCTGATTGAATCTAATCATGATATTGAAATCTTGAGAGCAGGTTCTTATCCTTG
GTCAACCAAGCAACGTATCCTCTCTGATCAGGGTCACTTGTGTAATGAGGATGGAGCCGATGCTATGATTCGTACCATCG
GTAATAAAACTAAAAAGATTTATCTGGGTCACCTTTCTAAAGAAAATAATATCAAGGAATTGGCCTACATGACGATGGAA
AATCAGTTGGCTCGCGCTGACTTTGGTGTTGGAACTGACTTTAAGATTTTTGGTACCTCACCAGATACGGCGACCCCACT
AACAGATATTTAG

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.985

99.259

0.774

Multiple sequence alignment