Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   H0508_RS02170 Genome accession   NZ_LR822014
Coordinates   407029..407472 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_36     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 402029..412472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0508_RS02150 (STHERMO_0443) - 402549..403301 (-) 753 Protein_372 NUDIX domain-containing protein -
  H0508_RS02155 (STHERMO_0445) - 403365..404471 (-) 1107 WP_011225557.1 AAA family ATPase -
  H0508_RS02160 (STHERMO_0446) gdhA 404815..406167 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  H0508_RS02165 (STHERMO_0447) - 406427..406837 (+) 411 WP_011225559.1 peptide deformylase -
  H0508_RS02170 (STHERMO_0448) rcrR 407029..407472 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  H0508_RS02175 (STHERMO_0449) rcrP 407476..409290 (+) 1815 WP_011225560.1 ABC transporter ATP-binding protein Regulator
  H0508_RS02180 (STHERMO_0450) rcrQ 409280..411058 (+) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  H0508_RS02185 (STHERMO_0451) - 411214..411462 (+) 249 WP_011225562.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=1130839 H0508_RS02170 WP_002945408.1 407029..407472(+) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_36]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=1130839 H0508_RS02170 WP_002945408.1 407029..407472(+) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_36]
ATGCATGGGAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment