Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   H0502_RS06070 Genome accession   NZ_LR822013
Coordinates   1210427..1210870 (-) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_32     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1205427..1215870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0502_RS06055 (STHERMO_1395) - 1206314..1206685 (-) 372 WP_224103327.1 GNAT family acetyltransferase -
  H0502_RS06060 (STHERMO_1396) rcrQ 1206841..1208619 (-) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  H0502_RS06065 (STHERMO_1397) rcrP 1208609..1210423 (-) 1815 WP_014608025.1 ABC transporter ATP-binding protein Regulator
  H0502_RS06070 (STHERMO_1398) rcrR 1210427..1210870 (-) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  H0502_RS06075 (STHERMO_1399) - 1211061..1211480 (-) 420 WP_179970751.1 peptide deformylase -
  H0502_RS06080 (STHERMO_1400) gdhA 1211739..1213091 (-) 1353 WP_002949856.1 NADP-specific glutamate dehydrogenase -
  H0502_RS06085 (STHERMO_1401) - 1213439..1214545 (+) 1107 WP_014608024.1 AAA family ATPase -
  H0502_RS06090 (STHERMO_1402) - 1214609..1215363 (+) 755 Protein_1216 NUDIX domain-containing protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=1130794 H0502_RS06070 WP_002945408.1 1210427..1210870(-) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_32]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=1130794 H0502_RS06070 WP_002945408.1 1210427..1210870(-) (rcrR) [Streptococcus thermophilus isolate STH_CIRM_32]
ATGCATGGTAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGTGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment