Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   H0505_RS07355 Genome accession   NZ_LR822012
Coordinates   1425431..1426162 (-) Length   243 a.a.
NCBI ID   WP_179971024.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_30     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1420431..1431162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0505_RS07330 (STHERMO_1615) - 1421480..1422661 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  H0505_RS07340 (STHERMO_1616) trmB 1422897..1423538 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  H0505_RS07345 (STHERMO_1617) ccrZ 1423548..1424339 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  H0505_RS07350 (STHERMO_1618) pptB 1424397..1425431 (-) 1035 WP_372433575.1 ABC transporter permease Regulator
  H0505_RS07355 (STHERMO_1619) pptA 1425431..1426162 (-) 732 WP_179971024.1 ABC transporter ATP-binding protein Regulator
  H0505_RS07360 (STHERMO_1620) - 1426227..1426646 (+) 420 WP_179971025.1 HIT family protein -
  H0505_RS07365 (STHERMO_1621) - 1426643..1426951 (+) 309 WP_096811620.1 hypothetical protein -
  H0505_RS09855 (STHERMO_1622) - 1426993..1427154 (-) 162 WP_232085674.1 hypothetical protein -
  H0505_RS09860 (STHERMO_1623) - 1427503..1427673 (-) 171 WP_011226439.1 hypothetical protein -
  H0505_RS07375 (STHERMO_1624) - 1427743..1428378 (-) 636 WP_179971026.1 DUF4230 domain-containing protein -
  H0505_RS10010 (STHERMO_1625) - 1428397..1428522 (-) 126 WP_011681534.1 hypothetical protein -
  H0505_RS07380 (STHERMO_1626) - 1428931..1431030 (-) 2100 WP_022096464.1 ATP-dependent Clp protease ATP-binding subunit -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26846.09 Da        Isoelectric Point: 4.4606

>NTDB_id=1130747 H0505_RS07355 WP_179971024.1 1425431..1426162(-) (pptA) [Streptococcus thermophilus isolate STH_CIRM_30]
MLKLEKVTGGYANILVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDPASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKANGKSILMSTHVLDSAEKMCDRFVILHHGQILAQGTIDELRQTFGDSSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1130747 H0505_RS07355 WP_179971024.1 1425431..1426162(-) (pptA) [Streptococcus thermophilus isolate STH_CIRM_30]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTACGCTAATATTCTCGTCCTAAAAGATGTCACTTTTGAGGTGGCTGATGG
CGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGGAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCCT
ATGGAGGACAGATTGCCATTGATGGGTTAACTATTCAACAAGATCCAGCTAGCTATCGTCAGAAGATTGGCTATATTCCT
GAAACGCCAAGTCTTTATGAAGAATTGACGCTTCGTGAACATTTGGAAACGGTATTGATGGCCTATGGTCTTGATGTGAC
TGAGGGTATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGCTTAGATGAAAAGTTGGACTGGTTCCCGACTCAGTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCCTTTATTGTGAATCCAAGTCTTTTCATTGTTGATGAGCCCTTT
TTGGGATTGGATCCCTTGGCGATTTCTGATTTGATTGAGCTTCTGGCTGAGGAAAAAGCCAATGGCAAGTCTATTCTCAT
GTCGACTCACGTTTTGGATTCAGCTGAGAAGATGTGTGATCGCTTTGTGATTTTGCACCATGGACAGATCTTGGCACAGG
GGACGATTGATGAGCTTCGTCAGACCTTTGGTGACAGTAGTGCTAGTCTTAACGATATCTATATGCAGTTGACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

99.588

100

0.996
  pptA Streptococcus salivarius strain HSISS4

96.708

100

0.967

Multiple sequence alignment